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Thermotogae
Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Capnocytophaga ochracea DSM 7271  

Data for CP001632  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001632.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001632_1805 CDS_2181815-2184301 82.2 3.1e-23 1
CP001632_0205 CDS_273131-274729 57.1 4.1e-16 1
CP001632_0217 CDS_288872-286068 53.8 3.5e-15 1
CP001632_0999 CDS_1185119-1181076 53.4 4.5e-15 1
CP001632_1541 CDS_1860735-1864625 46.5 4e-13 1
CP001632_1450 CDS_1739027-1734897 42.9 4.4e-12 1
CP001632_1430 CDS_1709688-1710962 42.4 6.2e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001632_1805 1/1 329 394 .. 1 87 [] 82.2 3.1e-23
CP001632_0205 1/1 307 375 .. 1 87 [] 57.1 4.1e-16
CP001632_0217 1/1 413 479 .. 1 87 [] 53.8 3.5e-15
CP001632_0999 1/1 831 897 .. 1 87 [] 53.4 4.5e-15
CP001632_1541 1/1 791 860 .. 1 87 [] 46.5 4e-13
CP001632_1450 1/1 847 909 .. 1 87 [] 42.9 4.4e-12
CP001632_1430 1/1 214 280 .. 1 87 [] 42.4 6.2e-12

Alignments of top-scoring domains:
CP001632_1805: domain 1 of 1, from 329 to 394: score 82.2, E = 3.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++sH+LRTPL++I gy+elL + ++ s++
CP001632_1 329 NREQLISMVSHDLRTPLSSIVGYSELLSK---------QKISDKG-- 364

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ i+ ++e++++L+++lLd++rieag
CP001632_1 365 ----------KNYLSHIKYSSEYISKLVDELLDYTRIEAG 394

CP001632_0205: domain 1 of 1, from 307 to 375: score 57.1, E = 4.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+ HE++TP++++ + ++ L++ + ++e++
CP001632_0 307 IKTDFINNMTHEFKTPIATMNLVLDSLKT-------PVALHDPEKI- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++++++e +r+l++++++L++sr+e g
CP001632_0 346 ----------KGYVKILKQENKRMLAQVENILQISRLEKG 375

CP001632_0217: domain 1 of 1, from 413 to 479: score 53.8, E = 3.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak f+ n+sHE++TPL+ I+g +++Ll+ l+ e+
CP001632_0 413 AKLLFFTNISHEFKTPLSLILGPVQTLLA--------HNSLPKEE-- 449

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i++ ++rll+Li+++ ++ e+g
CP001632_0 450 ----------QDLLFLIKKNSNRLLHLISEVIEFRSYENG 479

CP001632_0999: domain 1 of 1, from 831 to 897: score 53.4, E = 4.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++n+sHE++TPL+ I g + + + +e s+++
CP001632_0 831 MKTNFFSNISHEFKTPLSLIVGPLNQMVD---------DENSPKE-- 866

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ +lr a+ l rLin+lLd+ ++e +
CP001632_0 867 ---------YKDKYTMMLRNAQKLMRLINQLLDFRKLEKN 897

CP001632_1541: domain 1 of 1, from 791 to 860: score 46.5, E = 4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fl n+sHELRTPLt I + ++ Ll+ ++++l+ q
CP001632_1 791 DKIQFLTNVSHELRTPLTLIYAPLKRLLN-----HTESSKLTRSQ-- 830

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le++ r+a + ++in +Ld+ r +
CP001632_1 831 ----------KTQLESAFRQATTMKNIINWVLDYNRNTSL 860

CP001632_1450: domain 1 of 1, from 847 to 909: score 42.9, E = 4.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +f+ ++sHE+RTPLt ++ ++ ++e e+++
CP001632_1 847 MKMQFFTDVSHEFRTPLTLMSHAVTEMEE----------EMPS---- 879

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++t++r + l++++n+lL++ r++
CP001632_1 880 ----------NKYVHTLKRNTGKLSNMVNELLEIHRMDVY 909

CP001632_1430: domain 1 of 1, from 214 to 280: score 42.4, E = 6.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ n+sHEL TPL+ + +elL + d+ l+e+q
CP001632_1 214 EQKVFIENASHELQTPLAITLNKLELLAD--------DPSLTEKQ-- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ +++++ r+ +L lL l+rie+
CP001632_1 251 ----------LVQLSEVKQSLMRMTHLNKSLLMLTRIENH 280


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 14 0|==
-13 32 1|*===
-12 129 49|======*==========
-11 249 257|================================*
-10 453 477|========================================================= *
-9 401 493|=================================================== *
-8 369 369|==============================================*
-7 221 232|============================*
-6 122 133|================*
-5 74 73|=========*
-4 48 39|====*=
-3 28 20|==*=
-2 11 10|=*
-1 3 5|*
0 5 2|*
1 1 1|*
> 2 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 151.7743
P(chi-square) = 1.608e-27

Total sequences searched: 2171

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: