Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Francisella tularensis subsp. tularensis NE061598  

Data for CP001633  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001633.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001633_1770 CDS_1826609-1823928 59.6 6.7e-17 1
CP001633_0097 CDS_99204-97777 57.0 3.6e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001633_1770 1/1 664 732 .. 1 87 [] 59.6 6.7e-17
CP001633_0097 1/1 249 314 .. 1 87 [] 57.0 3.6e-16

Alignments of top-scoring domains:
CP001633_1770: domain 1 of 1, from 664 to 732: score 59.6, E = 6.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+L+TPL++I+g+++ ++ + + ++eq+
CP001633_1 664 LQKSMLSSVSHDLKTPLASIMGALSSIKSYK-------DSFNPEQQ- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ +l e++rl++ i+++ ++ + ++g
CP001633_1 703 ----------VEMLDLALTESKRLDSYIDNIIQMLKVDSG 732

CP001633_0097: domain 1 of 1, from 249 to 314: score 57.0, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +++HEL+TP++++++++e++l+ + +++
CP001633_0 249 REKRFSGDAAHELKTPIAGVKTLVEIALA----------SDDIDEI- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i+++++r +++i++lL+lsri+ +
CP001633_0 285 ----------KQKLERIKSSTNRYSHIIDQLLTLSRIQPN 314


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 1 0|=
-14 16 0|===
-13 62 1|*==========
-12 114 41|======*============
-11 285 217|====================================*===========
-10 312 403|==================================================== *
-9 337 416|========================================================= *
-8 238 312|======================================== *
-7 184 196|=============================== *
-6 144 113|==================*=====
-5 66 62|==========*
-4 26 33|=====*
-3 15 17|==*
-2 6 9|=*
-1 10 4|*=
0 8 2|*=
1 6 1|*
2 2 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 210.8137
P(chi-square) = 1.688e-309

Total sequences searched: 1836

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: