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Thermotogae
Classification of phyla is from NCBI page
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11 projects found  

1 accessions found for Kosmotoga olearia TBF 19.5.1  

Data for CP001634  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001634.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001634_0438 CDS_474955-472079 101.8 8.8e-29 1
CP001634_1533 CDS_1684700-1685953 98.5 7.7e-28 1
CP001634_0995 CDS_1078463-1076847 94.8 8.1e-27 1
CP001634_0109 CDS_125629-127308 92.2 4.6e-26 1
CP001634_1327 CDS_1447294-1449036 79.4 1.9e-22 1
CP001634_0009 CDS_7968-10667 68.6 2.1e-19 1
CP001634_0541 CDS_602187-600817 64.0 4.3e-18 1
CP001634_0896 CDS_968262-969572 60.2 5.3e-17 1
CP001634_0818 CDS_884594-883338 57.0 4.3e-16 1
CP001634_0692 CDS_759798-758806 52.8 6.8e-15 1
CP001634_1391 CDS_1523909-1522599 46.3 4.7e-13 1
CP001634_1811 CDS_1989191-1990471 40.5 2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001634_0438 1/1 337 402 .. 1 87 [] 101.8 8.8e-29
CP001634_1533 1/1 186 253 .. 1 87 [] 98.5 7.7e-28
CP001634_0995 1/1 299 367 .. 1 87 [] 94.8 8.1e-27
CP001634_0109 1/1 320 388 .. 1 87 [] 92.2 4.6e-26
CP001634_1327 1/1 344 408 .. 1 87 [] 79.4 1.9e-22
CP001634_0009 1/1 674 739 .. 1 87 [] 68.6 2.1e-19
CP001634_0541 1/1 231 297 .. 1 87 [] 64.0 4.3e-18
CP001634_0896 1/1 224 291 .. 1 87 [] 60.2 5.3e-17
CP001634_0818 1/1 191 257 .. 1 87 [] 57.0 4.3e-16
CP001634_0692 1/1 104 171 .. 1 87 [] 52.8 6.8e-15
CP001634_1391 1/1 220 286 .. 1 87 [] 46.3 4.7e-13
CP001634_1811 1/1 219 280 .. 1 81 [. 40.5 2e-11

Alignments of top-scoring domains:
CP001634_0438: domain 1 of 1, from 337 to 402: score 101.8, E = 8.8e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHE+RTP++aI+g++elLl +e +ee+
CP001634_0 337 MKSEFLANMSHEMRTPMNAILGFTELLLS---------EETNEEK-- 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l ti+r++e+ll+Lind+Ldls+ie+g
CP001634_0 373 ----------RKHLVTIYRSGEHLLSLINDVLDLSKIESG 402

CP001634_1533: domain 1 of 1, from 186 to 253: score 98.5, E = 7.7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++n+sHELRTPLt+I gyae+Lle +ls+e++
CP001634_1 186 MRREFVSNVSHELRTPLTSIHGYAETLLE---------YDLSDEET- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r++l++i+ e+ r+ rLindlLdl+++eag
CP001634_1 223 ---------VRKFLRIIEGESARMTRLINDLLDLEKLEAG 253

CP001634_0995: domain 1 of 1, from 299 to 367: score 94.8, E = 8.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHELRTPL++I+g+++++l +++++ +eeq
CP001634_0 299 LKSEFLATMSHELRTPLNSIIGFVSMILQ------GISGDINEEQ-- 337

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ +++++ +ll+Lind+Ld+s+ieag
CP001634_0 338 ----------RKQLSMVHSSSIHLLNLINDILDISKIEAG 367

CP001634_0109: domain 1 of 1, from 320 to 388: score 92.2, E = 4.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla++sHELRTPL++I g+++++l ++++e +eeq
CP001634_0 320 LKSEFLATMSHELRTPLNSITGFVSMILQ------GISGEINEEQ-- 358

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ +++++ +ll+Lind+Ld+s+ieag
CP001634_0 359 ----------RKQLSMVHSSSIHLLNLINDILDISKIEAG 388

CP001634_1327: domain 1 of 1, from 344 to 408: score 79.4, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++n+sHELRTPLt I+gy+e+L e ++ +
CP001634_1 344 SQAAFFSNISHELRTPLTIILGYSEMLYE----------IVGPAE-- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ i ++a++ll+L+nd+Ld+s+i +
CP001634_1 379 ----------RRMVSMIADSANYLLKLVNDILDISKITSR 408

CP001634_0009: domain 1 of 1, from 674 to 739: score 68.6, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a ++HE+R+P+t I+g++ + + +++ e++
CP001634_0 674 ALGEMSAKVAHEIRNPITIISGFTRRIAR----------TRDREKI- 709

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+e++ re+erl+ ++nd+Ld+sr
CP001634_0 710 ----------QQYVEILNRELERLETIVNDVLDYSRRAKK 739

CP001634_0541: domain 1 of 1, from 231 to 297: score 64.0, E = 4.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f an++H+LRTPLt+I+g +++ l+ e+++ +
CP001634_0 231 SQKQFSANAAHDLRTPLTSIKGIIDVTLN---------RERDALE-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ l i++++er+++L++ lL +r ++
CP001634_0 267 ---------YKDSLIQIRKQVERMSKLVDTLLIVARFDSK 297

CP001634_0896: domain 1 of 1, from 224 to 291: score 60.2, E = 5.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f ++++HE+R PLtaI+g++ ++++ ++++++e +
CP001634_0 224 RQEQFSSDVAHEIRSPLTAILGFSRMIQR--------WGARDPEIV- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + i + a +l L + lL ls+
CP001634_0 262 ----------EESAKNIAETAAKMLTLTEGLLFLSKPNLS 291

CP001634_0818: domain 1 of 1, from 191 to 257: score 57.0, E = 4.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++ + H+L+TPL+++++++el l ++ ++e++
CP001634_0 191 KLRIFISQMTHQLKTPLASMKLMIELSLS---------DNIDPEKK- 227

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le+ l e + ++ Li+ lLd+sr+e g
CP001634_0 228 ----------REFLERSLAEQNKMEWLIQTLLDISRLEIG 257

CP001634_0692: domain 1 of 1, from 104 to 171: score 52.8, E = 6.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+ HE+ TPL++++gya+l+ + + +e ++e
CP001634_0 104 AKTDFVNFFVHEISTPLAVVSGYAQLIFD-------RKDEIPPEL-- 141

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + il+++erl++Li++l +l+ ie g
CP001634_0 142 ----------SEAASGILKSSERLSKLIEELGELANIELG 171

CP001634_1391: domain 1 of 1, from 220 to 286: score 46.3, E = 4.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ a ++HELRTPL++++ +++l+l+ + s + +
CP001634_1 220 DAKALSAKIAHELRTPLSVLKSTLQLALA---------RNDSVDSM- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ lre++ l + ndlL +s ie g
CP001634_1 257 ----------KRSLKESLRELDNLIQTSNDLLLISNIEKG 286

CP001634_1811: domain 1 of 1, from 219 to 280: score 40.5, E = 2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
f +++HEL+TPL+ I+gy+ +L++ l e+++
CP001634_1 219 DEKAFSVSAAHELKTPLANIIGYVGMLRR---------WGLQHEDIA 256

peLRledpeyreyletilreaerllrLindlLdl<-*
e le+i+r a l++L++ +L l
CP001634_1 257 ----------YESLERIERTAIELNDLVSKFLNL 280


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 11 0|==
-13 20 1|*==
-12 105 48|=====*========
-11 227 251|============================= *
-10 351 465|============================================ *
-9 425 480|====================================================== *
-8 321 360|========================================= *
-7 266 226|============================*=====
-6 160 130|================*===
-5 82 71|========*==
-4 57 38|====*===
-3 29 20|==*=
-2 25 10|=*==
-1 11 5|*=
0 3 2|*
1 6 1|*
2 4 0|=
3 0 0|
> 4 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 159.9697
P(chi-square) = 1.357e-28

Total sequences searched: 2118

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: