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Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for Variovorax paradoxus S110  

Data for CP001635  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001635.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001635_2281 CDS_2476190-2477485 92.6 8.4e-26 1
CP001635_3102 CDS_3306239-3309661 86.9 3.6e-24 1
CP001635_2944 CDS_3145576-3144080 77.0 2.3e-21 1
CP001635_4189 CDS_4484931-4481296 72.8 3.6e-20 1
CP001635_1645 CDS_1791083-1792639 71.7 7.1e-20 1
CP001635_0947 CDS_1057292-1055592 68.8 4.7e-19 1
CP001635_3514 CDS_3756698-3758032 67.3 1.2e-18 1
CP001635_4931 CDS_5305569-5302807 66.7 1.9e-18 1
CP001635_5137 CDS_5520452-5521897 65.5 4e-18 1
CP001635_0708 CDS_784234-786159 65.5 4.2e-18 1
CP001635_4549 CDS_4891709-4893799 64.5 7.9e-18 1
CP001635_0026 CDS_29663-28221 59.0 3e-16 1
CP001635_0593 CDS_652124-654454 58.3 4.6e-16 1
CP001635_0510 CDS_560710-558821 57.0 1e-15 1
CP001635_4923 CDS_5295623-5294220 56.9 1.1e-15 1
CP001635_1622 CDS_1766559-1767638 56.7 1.2e-15 1
CP001635_2349 CDS_2548638-2549966 55.7 2.5e-15 1
CP001635_0037 CDS_38774-40186 55.4 3e-15 1
CP001635_3104 CDS_3312304-3311153 51.0 5.2e-14 1
CP001635_0508 CDS_557604-555613 50.8 6e-14 1
CP001635_2969 CDS_3168900-3170321 50.7 6.7e-14 1
CP001635_4208 CDS_4498463-4500052 50.5 7.1e-14 1
CP001635_4324 CDS_4623852-4622071 50.2 8.9e-14 1
CP001635_3978 CDS_4272191-4270776 49.0 1.9e-13 1
CP001635_0258 CDS_278653-277457 48.7 2.4e-13 1
CP001635_0955 CDS_1065981-1064554 47.2 6.1e-13 1
CP001635_0472 CDS_515942-514146 44.5 3.7e-12 1
CP001635_4831 CDS_5208833-5207436 43.6 6.5e-12 1
CP001635_2544 CDS_2725050-2723635 43.4 7.4e-12 1
CP001635_2760 CDS_2946043-2944823 40.7 4.5e-11 1
CP001635_3241 CDS_3460213-3461565 38.3 2.1e-10 1
CP001635_2133 CDS_2306279-2303739 35.0 1.8e-09 1
CP001635_2748 CDS_2935975-2937474 33.3 5.3e-09 1
CP001635_3894 CDS_4183568-4185748 33.2 5.9e-09 1
CP001635_5096 CDS_5474582-5472531 30.2 4.1e-08 1
CP001635_3288 CDS_3512416-3513822 29.7 5.7e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001635_2281 1/1 195 261 .. 1 87 [] 92.6 8.4e-26
CP001635_3102 1/1 686 751 .. 1 87 [] 86.9 3.6e-24
CP001635_2944 1/1 270 338 .. 1 87 [] 77.0 2.3e-21
CP001635_4189 1/1 756 822 .. 1 87 [] 72.8 3.6e-20
CP001635_1645 1/1 151 217 .. 1 87 [] 71.7 7.1e-20
CP001635_0947 1/1 337 402 .. 1 87 [] 68.8 4.7e-19
CP001635_3514 1/1 224 290 .. 1 87 [] 67.3 1.2e-18
CP001635_4931 1/1 687 751 .. 1 87 [] 66.7 1.9e-18
CP001635_5137 1/1 244 310 .. 1 87 [] 65.5 4e-18
CP001635_0708 1/1 275 341 .. 1 87 [] 65.5 4.2e-18
CP001635_4549 1/1 471 538 .. 1 87 [] 64.5 7.9e-18
CP001635_0026 1/1 255 321 .. 1 87 [] 59.0 3e-16
CP001635_0593 1/1 528 600 .. 1 87 [] 58.3 4.6e-16
CP001635_0510 1/1 252 317 .. 1 87 [] 57.0 1e-15
CP001635_4923 1/1 236 301 .. 1 87 [] 56.9 1.1e-15
CP001635_1622 1/1 135 200 .. 1 87 [] 56.7 1.2e-15
CP001635_2349 1/1 221 286 .. 1 87 [] 55.7 2.5e-15
CP001635_0037 1/1 248 313 .. 1 87 [] 55.4 3e-15
CP001635_3104 1/1 150 215 .. 1 87 [] 51.0 5.2e-14
CP001635_0508 1/1 297 361 .. 1 87 [] 50.8 6e-14
CP001635_2969 1/1 248 311 .. 1 87 [] 50.7 6.7e-14
CP001635_4208 1/1 296 359 .. 1 87 [] 50.5 7.1e-14
CP001635_4324 1/1 215 280 .. 1 87 [] 50.2 8.9e-14
CP001635_3978 1/1 241 304 .. 1 87 [] 49.0 1.9e-13
CP001635_0258 1/1 183 244 .. 1 87 [] 48.7 2.4e-13
CP001635_0955 1/1 252 320 .. 1 87 [] 47.2 6.1e-13
CP001635_0472 1/1 228 297 .. 1 87 [] 44.5 3.7e-12
CP001635_4831 1/1 249 311 .. 1 87 [] 43.6 6.5e-12
CP001635_2544 1/1 244 303 .. 1 87 [] 43.4 7.4e-12
CP001635_2760 1/1 168 241 .. 1 87 [] 40.7 4.5e-11
CP001635_3241 1/1 237 299 .. 1 87 [] 38.3 2.1e-10
CP001635_2133 1/1 600 670 .. 1 87 [] 35.0 1.8e-09
CP001635_2748 1/1 267 338 .. 1 87 [] 33.3 5.3e-09
CP001635_3894 1/1 505 573 .. 1 87 [] 33.2 5.9e-09
CP001635_5096 1/1 449 520 .. 1 87 [] 30.2 4.1e-08
CP001635_3288 1/1 247 312 .. 1 87 [] 29.7 5.7e-08

Alignments of top-scoring domains:
CP001635_2281: domain 1 of 1, from 195 to 261: score 92.6, E = 8.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHE+RTPLt++ g++e+L++ +l++++r
CP001635_2 195 MRRDFVANVSHEIRTPLTVLAGFVETLQN---------LPLDADER- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ + ++++r++ L+ndlL+lsr+e
CP001635_2 232 ----------ARYLSLMSQQSHRMETLVNDLLTLSRLEGS 261

CP001635_3102: domain 1 of 1, from 686 to 751: score 86.9, E = 3.6e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++ +a++ HELRTPL++I+gy+++Ll+ +e+ ++
CP001635_3 686 AKTRYVAGMTHELRTPLNSILGYSQILLK---------GEAVAPP-- 721

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ti+r++e++l Li+ lLdl+rieag
CP001635_3 722 ----------REAVQTIQRSGEHMLGLIDGLLDLARIEAG 751

CP001635_2944: domain 1 of 1, from 270 to 338: score 77.0, E = 2.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+Ll ++ + lsee+r
CP001635_2 270 QRRELFANISHDLRTPLTSLHGYLETLLLKA-------GSLSEEER- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yle++l +++ rL ++l +l+r+e g
CP001635_2 309 ----------RRYLEIALGQSRKVGRLAQELFELARLEYG 338

CP001635_4189: domain 1 of 1, from 756 to 822: score 72.8, E = 3.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ ++++sHELRTPL++I+gya+l+ e d+ ++
CP001635_4 756 AKSRYISAISHELRTPLNSILGYAQLMGE--------DHSVPPHR-- 792

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+r +e+ll+Li+ L ++ ieag
CP001635_4 793 ----------QQAVAVIKRGGEHLLSLIEGTLAIAHIEAG 822

CP001635_1645: domain 1 of 1, from 151 to 217: score 71.7, E = 7.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla+l+HELR+PL+ +++++ lL + + + ++
CP001635_1 151 RKTEFLATLAHELRNPLAPMSTALTLLMR---------KPHEPAEA- 187

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y e + r+++++ rL+ndl++ sri g
CP001635_1 188 ----------RRYYELMGRQIDHMVRLVNDLMEVSRITRG 217

CP001635_0947: domain 1 of 1, from 337 to 402: score 68.8, E = 4.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+R+PL+aI ++ lL e +l+++ +
CP001635_0 337 AMGRMSAAVAHEIRNPLAAITQASALLNE----------DLTDPAH- 372

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ +++ a+rl r+++d+Ld sr++++
CP001635_0 373 ----------RKLTSMVQHNAQRLARIVDDVLDVSRARQQ 402

CP001635_3514: domain 1 of 1, from 224 to 290: score 67.3, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTPL+ ++g++el+l +++ +++
CP001635_3 224 QLESFNADVAHELRTPLANLIGTTELALS---------RPRPNDEL- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l + l+e+ rl+ ++ d+L ls++e g
CP001635_3 261 ----------QAVLASNLEEVGRLSGIVTDMLFLSQAERG 290

CP001635_4931: domain 1 of 1, from 687 to 751: score 66.7, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+ RTPLta++++ae L++ l++e +
CP001635_4 687 LRNALLGAISHDVRTPLTALIALAESLQT-----------LPPEAH- 721

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ + i +a+ l +L+n+lLd++r+e+g
CP001635_4 722 ----------AEAARAIVAQAHELHALVNNLLDMARLESG 751

CP001635_5137: domain 1 of 1, from 244 to 310: score 65.5, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fla+++H+L+TPL+++r+ a+l+++ + ++++++
CP001635_5 244 TQKRFLADAAHQLKTPLAGLRMQADLAQR---------EGANADEL- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i r++ r + +n+lL l+r+e+
CP001635_5 281 ----------KQSLKQIGRASVRATHTVNQLLSLARAEST 310

CP001635_0708: domain 1 of 1, from 275 to 341: score 65.5, E = 4.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + fla+l HELR+PL+ I+ ++elL++ +++ + +
CP001635_0 275 RVTNFLAMLGHELRNPLAPISNALELLKR---------EKAESAAL- 311

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i r+++++ rL++dlLd ri +g
CP001635_0 312 ----------VHTRDIIGRQLRQITRLVDDLLDVGRITSG 341

CP001635_4549: domain 1 of 1, from 471 to 538: score 64.5, E = 7.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++++sHE+RTPLt+I g+a+ L ++l+ e +
CP001635_4 471 QQREFVSMVSHEFRTPLTVIDGAAQSLDI---------SKLGGEPV- 507

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +e+i+r+++rl Li+++L r++ +
CP001635_4 508 ---------VKQRTERIRRAVQRLTMLIENILLADRLQPE 538

CP001635_0026: domain 1 of 1, from 255 to 321: score 59.0, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + + HE + PL+aIrg+aelL+e + ++ +r
CP001635_0 255 YVADYVQTFTHEVKSPLSAIRGAAELLQE---------PSMPHAER- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i+re++r++++++++++l+ +e+
CP001635_0 292 ----------ERFLKNIERETQRIQEIVDRMMELTALETR 321

CP001635_0593: domain 1 of 1, from 528 to 600: score 58.3, E = 4.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++ +++++
CP001635_0 528 AWGEVARRLAHEIKNPLTPIQLSAERLEMKL------SGKVAPPEQA 568

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti ++++ + rL+n+++d++r+ a
CP001635_0 569 VL--------VKSVKTIVDQVDAMKRLVNEFRDYARLPAA 600

CP001635_0510: domain 1 of 1, from 252 to 317: score 57.0, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+++la++sH+LR+PL+a+ ++++ L + +e ++
CP001635_0 252 AKTRLLAAASHDLRQPLHALTLFSDGLAN---------GETDPLR-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++++l+rL ++lL ls+++ag
CP001635_0 288 ----------LQRIGHIRECVDSLDRLFSELLNLSQLDAG 317

CP001635_4923: domain 1 of 1, from 236 to 301: score 56.9, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +++HELRTP++aI + +e L++ + ++ ++
CP001635_4 236 TQRRFVQDAAHELRTPMAAIGLQIENLRA----------HVPAGEA- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ ++ + r ++Li++lL lsr +a+
CP001635_4 272 ----------TERFNQLEAGVTRAQHLIEQLLSLSRQDAP 301

CP001635_1622: domain 1 of 1, from 135 to 200: score 56.7, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL++ e + ++
CP001635_1 135 ANKELIRNLAHEIKNPLGGIRGAAQLLQM----------EVESRDL- 170

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i++ea+rl+ L+++lL r +
CP001635_1 171 ----------IEYTQVIIHEADRLQTLVDRLLAPHRRPHV 200

CP001635_2349: domain 1 of 1, from 221 to 286: score 55.7, E = 2.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ f+a+++HELR PL+a+++ ++ L++ + ++ r
CP001635_2 221 AQKHFVADAAHELRSPLAALKLQVQGLQR----------ASDAASR- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++r rL++++L l+r ea
CP001635_2 257 ----------ELAVSRLVAGIDRATRLVEQMLALARHEAS 286

CP001635_0037: domain 1 of 1, from 248 to 313: score 55.4, E = 3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ef+ n++HELRTPL++Ir++ae l+ ++
CP001635_0 248 AQREFVGNVAHELRTPLAGIRALAEYGLA----------QHDSTV-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re l ++ + r ++Li++lL l+ +++
CP001635_0 283 ---------WREQLARVAERQARASHLIDQLLALALADEA 313

CP001635_3104: domain 1 of 1, from 150 to 215: score 51.0, E = 5.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fla l H+LR+PL+a++ ++lL+ + + +
CP001635_3 150 SRDTFLAVLGHDLRNPLSALSSCIHLLEL----------AGEARPK- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++++r++ ++++++ dlL+++r + g
CP001635_3 186 ----------ERTLQIARRSIASINDMVTDLLEYTRTRLG 215

CP001635_0508: domain 1 of 1, from 297 to 361: score 50.8, E = 6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fla++sH+LR+PL+a+ ++++ Ll +s+ q
CP001635_0 297 SRARFLAAASHDLRQPLHAMGLFIDGLLP----------GASAAQ-- 331

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++++++e + L++dlL++sr++a+
CP001635_0 332 ----------RPAMLRLQESTEFMGVLLDDLLEISRLDAQ 361

CP001635_2969: domain 1 of 1, from 248 to 311: score 50.7, E = 6.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+++ +H+LRTPL+++++ ++ +++ ++ ++eq+
CP001635_2 248 HQKRFVRDSAHQLRTPLAVLKAQVQSARR---------GDVPPEQA- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i + +er L n++L l++ e+
CP001635_2 285 -------------LGEISQTVERATTLANQMLSLAKVEQL 311

CP001635_4208: domain 1 of 1, from 296 to 359: score 50.5, E = 7.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la+++HELRTPL+a+r+ +e+L++++ +e +
CP001635_4 296 SRRAWLADAAHELRTPLAAMRAEIEALQDGV-------RSFDERT-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++r++ rl +L++d L s e +
CP001635_4 334 -------------ALRLHRQVIRLGQLVDD-LRSSMREPQ 359

CP001635_4324: domain 1 of 1, from 215 to 280: score 50.2, E = 8.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+LR+PL+aI ++ +L++el ++ee +
CP001635_4 215 EKTRFLASASHDLRQPLHAIALFGAALENEL-------RGRPEELN- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ r+++ l + ++ +Ld+sr++ag
CP001635_4 254 -------------AQRLMRAVNALGASLDIMLDISRLDAG 280

CP001635_3978: domain 1 of 1, from 241 to 304: score 49.0, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla+++H++R+P+ a+++ya+ L++ e+++
CP001635_3 241 MKNRFLASAAHDMRQPVLALSLYADWLRN-------------EPEL- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+ +i r+++ ++L + + dl+ri++g
CP001635_3 274 ---------VLELAPKIVRATHAVNALFDSMFDLARIDSG 304

CP001635_0258: domain 1 of 1, from 183 to 244: score 48.7, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +lan+sHELR PLt Ir+ +el+ e s++
CP001635_0 183 SHKSLLANASHELRSPLTRIRMGLELMGE----------RPSPKA-- 217

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i r + l++Li+++L sr++a
CP001635_0 218 -------------REEISRNIGELDQLIDEILLASRLDAS 244

CP001635_0955: domain 1 of 1, from 252 to 320: score 47.2, E = 6.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k +fl+++sHEL+TPL+a+r ++lL++++ ++l++ q
CP001635_0 252 DKARFLRHVSHELKTPLAALREGVSLLEDGVT------GPLNPAQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++ + + +l+ +i+ lL + + +
CP001635_0 291 ----------LEVAQILNQNTVSLQGQIEALLRFNAAAFE 320

CP001635_0472: domain 1 of 1, from 228 to 297: score 44.5, E = 3.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++++ H+LR+P+ aI + ae+L+ +ld ++++ +
CP001635_0 228 ERLRFFSAANHDLRQPVMAIGLQAEVLRQQLD------NGADAPVV- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ r+ + l+ L n+lL++ riea
CP001635_0 268 ----------QHTVASLARAQQALEGLTNQLLEIGRIEAA 297

CP001635_4831: domain 1 of 1, from 249 to 311: score 43.6, E = 6.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ +l +lsHELR PLt r++aelL + t+ s +
CP001635_4 249 AKRGLLLALSHELRSPLTRARLNAELLPA---------TPESQAE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +lr+++ +++Li+dlL+ +r+ ++
CP001635_4 285 -------------REALLRDLNEMRDLISDLLESERLASP 311

CP001635_2544: domain 1 of 1, from 244 to 303: score 43.4, E = 7.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPL+ +r+ +e+ +
CP001635_2 244 DRAIMLAGISHDLRTPLARLRLETEMSVSD----------------- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + + ++ +l+++i+ +Ld++r ++
CP001635_2 274 ----------EDARDHMAADIAQLDAIIDKFLDYARPDHV 303

CP001635_2760: domain 1 of 1, from 168 to 241: score 40.7, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sHELRTPL+++ + ++l + ++ ++++l + +
CP001635_2 168 MRDDFMSMVSHELRTPLNTLYLETQLRQVQV-----SRGKLESFA-A 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++L ++e+ +r+++ + rLi+d+Ld +r++
CP001635_2 209 DRL-------PAMIERDQRQIRNMVRLIDDMLDVTRMRRD 241

CP001635_3241: domain 1 of 1, from 237 to 299: score 38.3, E = 2.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++an++HELRTPL+a r+ ++++le + r
CP001635_3 237 VERALAANAAHELRTPLAAARLRLQTALE-------------HDLR- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ +l++++ l++ + lL+lsr+e+
CP001635_3 270 ----------RNDVQAALDALQLLSHRAEKLLQLSRAESA 299

CP001635_2133: domain 1 of 1, from 600 to 670: score 35.0, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldk.v.lagdtelseeq
++e++++++HEL++PLtaI y+ + + ++a+dte+
CP001635_2 600 TMGEMASSVAHELNQPLTAITNYCNGMMS---RiKgQAIDTEALLAA 643

rlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+ ++a+r ++i++++ + + ++
CP001635_2 644 ---------------LEKTSKQAQRAGQIIQRIRSFVKRSEP 670

CP001635_2748: domain 1 of 1, from 267 to 338: score 33.3, E = 5.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a+l+HEL++PLta++++a+++++ + ++++++
CP001635_2 267 ALGELSAGLAHELNQPLTAVLANAQAARR--------LLDEDPPDLA 305

peLRledpeyreyletilreaerllrLindlLd.lsrieag<-*
++ r + + ++a+r + +l+ ++r eag
CP001635_2 306 TA--------RNAMGQAVEQARRAAGVVGRLRRvIERPEAG 338

CP001635_3894: domain 1 of 1, from 505 to 573: score 33.2, E = 5.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++++l+HEL++PL a++ +a+++++ +e++ + +l
CP001635_3 505 SLGEMASTLAHELNQPLMALSNFASAAKA--------FAEQGNQALL 543

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ +a+r +++++++ + r ++
CP001635_3 544 ----------ASSLDETMAQARRSAEIVRRIRGFVRQRTI 573

CP001635_5096: domain 1 of 1, from 449 to 520: score 30.2, E = 4.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+++ lsHEL +PL+aI ya l+ +g ++++e+
CP001635_5 449 TVGEMASLLSHELTQPLAAIASYATGSLN-----MLGPHAKGEQA-- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ ++++i ++a+r + i+ + d+ r +
CP001635_5 489 --------EVAMAVRRIAEQADRAGQVIRSVHDFVRRRDR 520

CP001635_3288: domain 1 of 1, from 247 to 312: score 29.7, E = 5.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl ++sH+LRT Lt++++ a+ +++ e+++ q+
CP001635_3 247 QQRQFLDDASHQLRTHLTTLQMQADYAKR----------EQDPAQV- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + e+ r r ++lL l r ++
CP001635_3 283 ----------QATLDALGTEIGRATRSAQQLLALGRSDTV 312


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-14 11 0|=
-13 59 3|*===
-12 168 119|======*===
-11 425 621|======================== *
-10 861 1152|================================================ *
-9 1059 1190|==========================================================*
-8 980 891|=================================================*=====
-7 691 561|===============================*=======
-6 427 323|=================*======
-5 243 177|=========*====
-4 129 94|=====*==
-3 63 50|==*=
-2 47 26|=*=
-1 18 13|*
0 12 7|*
1 2 3|*
2 4 1|*
3 2 1|*
4 1 0|=
5 0 0|
> 6 39 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 302.4330
P(chi-square) = 0

Total sequences searched: 5241

Whole sequence top hits:
tophits_s report:
Total hits: 36
Satisfying E cutoff: 36
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 36
Satisfying E cutoff: 36
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: