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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Brachybacterium faecium DSM 4810  

Data for CP001643  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001643.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001643_1868 CDS_2179938-2181029 76.2 2.3e-21 1
CP001643_0895 CDS_1053819-1052572 74.7 5.9e-21 1
CP001643_0757 CDS_898448-896859 73.5 1.3e-20 1
CP001643_1983 CDS_2309185-2307467 70.1 1.2e-19 1
CP001643_2635 CDS_3087372-3089165 67.5 6.6e-19 1
CP001643_0283 CDS_348946-350580 51.4 2.4e-14 1
CP001643_2027 CDS_2362923-2361460 33.7 2.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001643_1868 1/1 131 195 .. 1 87 [] 76.2 2.3e-21
CP001643_0895 1/1 155 221 .. 1 87 [] 74.7 5.9e-21
CP001643_0757 1/1 261 328 .. 1 87 [] 73.5 1.3e-20
CP001643_1983 1/1 289 356 .. 1 87 [] 70.1 1.2e-19
CP001643_2635 1/1 353 419 .. 1 87 [] 67.5 6.6e-19
CP001643_0283 1/1 282 346 .. 1 87 [] 51.4 2.4e-14
CP001643_2027 1/1 205 270 .. 1 87 [] 33.7 2.4e-09

Alignments of top-scoring domains:
CP001643_1868: domain 1 of 1, from 131 to 195: score 76.2, E = 2.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sHELRTP++++r+ +e L +++ te ++
CP001643_1 131 MRRDLVANVSHELRTPVAGLRAQLENLVDGV-------TEPDPAA-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++l e+erl++L++ lLdlsr++ag
CP001643_1 169 -------------LEVALTETERLSQLVDHLLDLSRLDAG 195

CP001643_0895: domain 1 of 1, from 155 to 221: score 74.7, E = 5.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI ++ae++++ ++ +++ +
CP001643_0 155 TRRDFVANVSHELKTPVGAITLLAETMED---------AAEDPDAV- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++ e++rl++L++++ +lsr + g
CP001643_0 192 ----------RRFAGRMQGETRRLSHLVQEIIELSRVQGG 221

CP001643_0757: domain 1 of 1, from 261 to 328: score 73.5, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ ++sHELRTPL+aIrg+ el ++ ++l+ ++
CP001643_0 261 KMRRFVGDASHELRTPLAAIRGFGELYRM---------GALPTDE-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i++ea+r+ +L+++lL l+r+++
CP001643_0 297 --------DVSSAMRRIEDEARRMGSLVENLLRLARLDEK 328

CP001643_1983: domain 1 of 1, from 289 to 356: score 70.1, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir+++++L + +++el+ e
CP001643_1 289 VQQRFVSDVSHELRTPLTTIRMASSVLDA-------RREELPGEL-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e + +++r + L+ dlL++sr +ag
CP001643_1 327 ----------QRTAELLAAQVQRFEVLLADLLEISRFDAG 356

CP001643_2635: domain 1 of 1, from 353 to 419: score 67.5, E = 6.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+++gy+el++++l +ls
CP001643_2 353 SQERFVASVSHELRTPLTSVIGYLELAQDDL--------ALSKAS-- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl++++r ae+ll +++dlL +++g
CP001643_2 390 ----------AAYLQVAHRNAEQLLLIVEDLLADQVARSG 419

CP001643_0283: domain 1 of 1, from 282 to 346: score 51.4, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++ HELRTPLt +rg++e+ ++ + q
CP001643_0 282 EQRRFMSDVGHELRTPLTIVRGTLETTDV---------EDVADVQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++l+e+er+ r + dl +l+ +
CP001643_0 318 -----------ESREIALEELERMGRVVGDLSELAASTRP 346

CP001643_2027: domain 1 of 1, from 205 to 270: score 33.7, E = 2.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s++++++sH+LRTPLta+++ ++ +l+ + see +
CP001643_2 205 AESRLASDASHQLRTPLTALSMRLDEILA----------TSSEEWV- 240

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ l++++rl + + dl r +
CP001643_2 241 ----------REEARISLEQIDRLTEVVHDLINAPRSSQR 270


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 20 2|*=
-12 93 70|======*==
-11 219 363|==================== *
-10 440 674|======================================== *
-9 613 696|======================================================== *
-8 555 521|===============================================*===
-7 448 328|=============================*===========
-6 297 189|=================*=========
-5 161 103|=========*=====
-4 94 55|====*====
-3 45 29|==*==
-2 25 15|=*=
-1 18 8|*=
0 12 4|*=
1 10 2|*
2 1 1|*
3 2 0|=
4 2 0|=
5 0 0|
> 6 9 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 348.3582
P(chi-square) = 0

Total sequences searched: 3068

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: