Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Brachybacterium faecium DSM 4810  

Data for CP001643  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001643.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001643_1970 CDS_2295271-2293778 100.4 1.7e-28 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001643_1970 1/1 292 357 .. 1 72 [. 100.4 1.7e-28

Alignments of top-scoring domains:
CP001643_1970: domain 1 of 1, from 292 to 357: score 100.4, E = 1.7e-28
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ++++LLr+Q+r+ k e+ +eaL E+ +RV +
CP001643_1 292 EVHHRVKNNLQTVAALLRMQSRRMKTDEA-----REALAEAMRRVST 333

mAliHEeLYksedldtvdfseYlek<-*
+Al+HE L ++ + v f+e++++
CP001643_1 334 IALVHESLLQGSQ-EAVHFDEVIDR 357


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 6 0|=
-14 8 0|=
-13 47 19|=*==
-12 164 201|=========== *
-11 866 561|=====================================*====================
-10 674 726|============================================= *
-9 436 613|============================== *
-8 389 411|========================== *
-7 188 244|============= *
-6 153 136|=========*=
-5 59 73|====*
-4 32 38|==*
-3 17 20|=*
-2 11 10|*
-1 10 5|*
0 3 2|*
1 0 1|*
2 2 0|=
3 0 0|
> 4 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 292.3159
P(chi-square) = 0

Total sequences searched: 3068

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: