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Classification of phyla is from NCBI page
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76 projects found  

5 accessions found for Ralstonia pickettii 12D  

Data for CP001644  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001644.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001644_2967 CDS_3176277-3180587 91.4 1.2e-25 1
CP001644_1682 CDS_1822623-1821295 89.5 4.3e-25 1
CP001644_0299 CDS_318026-316530 77.2 1.3e-21 1
CP001644_3223 CDS_3450941-3453757 73.5 1.4e-20 1
CP001644_1160 CDS_1250550-1251749 65.6 2.6e-18 1
CP001644_0817 CDS_862916-865354 64.2 6.1e-18 1
CP001644_0446 CDS_480645-479065 61.9 2.8e-17 1
CP001644_2601 CDS_2788951-2786912 59.0 1.9e-16 1
CP001644_3182 CDS_3408988-3410661 58.9 2.1e-16 1
CP001644_1490 CDS_1601329-1602648 58.7 2.3e-16 1
CP001644_3252 CDS_3482798-3481479 56.5 9.6e-16 1
CP001644_2296 CDS_2457899-2456067 55.2 2.2e-15 1
CP001644_2823 CDS_3023351-3024877 55.1 2.3e-15 1
CP001644_2753 CDS_2963895-2965853 51.9 1.9e-14 1
CP001644_3235 CDS_3465465-3466916 49.6 8.5e-14 1
CP001644_1541 CDS_1665968-1667329 49.0 1.3e-13 1
CP001644_2524 CDS_2700934-2702043 46.8 5.2e-13 1
CP001644_3300 CDS_3534369-3531898 45.9 9.7e-13 1
CP001644_2486 CDS_2655470-2653863 43.6 4.2e-12 1
CP001644_2751 CDS_2961084-2963375 41.4 1.8e-11 1
CP001644_1591 CDS_1722078-1724606 29.7 3.7e-08 1
CP001644_0190 CDS_202896-204908 28.7 7.4e-08 1
CP001644_2523 CDS_2699601-2700929 27.8 1.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001644_2967 1/1 832 897 .. 1 87 [] 91.4 1.2e-25
CP001644_1682 1/1 206 272 .. 1 87 [] 89.5 4.3e-25
CP001644_0299 1/1 270 338 .. 1 87 [] 77.2 1.3e-21
CP001644_3223 1/1 703 770 .. 1 87 [] 73.5 1.4e-20
CP001644_1160 1/1 175 240 .. 1 87 [] 65.6 2.6e-18
CP001644_0817 1/1 316 381 .. 1 87 [] 64.2 6.1e-18
CP001644_0446 1/1 291 356 .. 1 87 [] 61.9 2.8e-17
CP001644_2601 1/1 420 497 .. 1 87 [] 59.0 1.9e-16
CP001644_3182 1/1 310 375 .. 1 87 [] 58.9 2.1e-16
CP001644_1490 1/1 208 273 .. 1 87 [] 58.7 2.3e-16
CP001644_3252 1/1 220 285 .. 1 87 [] 56.5 9.6e-16
CP001644_2296 1/1 234 299 .. 1 87 [] 55.2 2.2e-15
CP001644_2823 1/1 252 317 .. 1 87 [] 55.1 2.3e-15
CP001644_2753 1/1 277 343 .. 1 87 [] 51.9 1.9e-14
CP001644_3235 1/1 259 324 .. 1 87 [] 49.6 8.5e-14
CP001644_1541 1/1 240 299 .. 1 87 [] 49.0 1.3e-13
CP001644_2524 1/1 141 214 .. 1 87 [] 46.8 5.2e-13
CP001644_3300 1/1 574 646 .. 1 87 [] 45.9 9.7e-13
CP001644_2486 1/1 309 377 .. 1 87 [] 43.6 4.2e-12
CP001644_2751 1/1 524 592 .. 1 87 [] 41.4 1.8e-11
CP001644_1591 1/1 613 683 .. 1 87 [] 29.7 3.7e-08
CP001644_0190 1/1 436 499 .. 1 82 [. 28.7 7.4e-08
CP001644_2523 1/1 220 288 .. 1 87 [] 27.8 1.3e-07

Alignments of top-scoring domains:
CP001644_2967: domain 1 of 1, from 832 to 897: score 91.4, E = 1.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla++sHE+RTP+++++g++elL+ t+l eq
CP001644_2 832 AKDRFLAMMSHEIRTPMNGVLGLVELLQQ---------TKLEGEQ-- 867

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ ++++++ ll++++d+Ld+++ieag
CP001644_2 868 ----------KQMVSLVQDSGRALLHILDDILDYAKIEAG 897

CP001644_1682: domain 1 of 1, from 206 to 272: score 89.5, E = 4.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHEL+TPLt+++g++e+ ++ +l+ee++
CP001644_1 206 MRRDFVANVSHELKTPLTVLSGFLETVRD---------IPLPEEDK- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ ++ +a r+++L++dlL l+ +e +
CP001644_1 243 ----------RRYLDMMHTQAMRMQHLVEDLLALATLEGN 272

CP001644_0299: domain 1 of 1, from 270 to 338: score 77.2, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+L+ ++ + l++e+r
CP001644_0 270 QRRELVANISHDLRTPLTSLHGYLETLRLKA-------GILDDEER- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l +++ rL ++l +l+r+e g
CP001644_0 309 ----------RRYLDIALGQSRKVGRLAQELFELARLEYG 338

CP001644_3223: domain 1 of 1, from 703 to 770: score 73.5, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt++ g+ae+Ll+ + ++l++ q
CP001644_3 703 LRNSLLAAVSHDLRTPLTGLVGMAETLLRAQ-------PPLPALQ-- 740

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ i ++a+r++ ++ +lLd++r++++
CP001644_3 741 ----------AEAAAAIGQQAQRMRTMVTNLLDMARLQNQ 770

CP001644_1160: domain 1 of 1, from 175 to 240: score 65.6, E = 2.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+++nl+HE+++PL +Irg+a+lL+ el+e +
CP001644_1 175 ANKELIRNLAHEIKNPLGGIRGAAQLLEF----------ELPERSL- 210

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey+++i++e++rl+ L+++lL+ r +
CP001644_1 211 ----------REYTQVIIKESDRLQTLVDRLLEPHRHPHI 240

CP001644_0817: domain 1 of 1, from 316 to 381: score 64.2, E = 6.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k fla +sHE+RTP+++I++ +elL++ + l+ +q
CP001644_0 316 DKAMFLAFISHEIRTPMHTILASLELLQR---------SQLTGQQ-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + +++e ll+L++d+L++sr+e+
CP001644_0 352 ----------ASRTDAAVSASETLLALLDDVLEYSRLESR 381

CP001644_0446: domain 1 of 1, from 291 to 356: score 61.9, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H+++TPL+++r+ ael+++ e+s++++
CP001644_0 291 TQKRFIADAAHQMKTPLAGLRMQAELAQR----------EQSPDEL- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l i ++++r +L+ +lL l+r+e+
CP001644_0 327 ----------RRTLAHIADSSDRTAHLVKQLLSLARMENM 356

CP001644_2601: domain 1 of 1, from 420 to 497: score 59.0, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++H++R+PL+aI+ +aelL + +gd+ + +++
CP001644_2 420 SMGRLVASVAHQIRNPLAAISQAAELLDD------PGDGQEGGAHMR 460

peLR..ledpeyreyletilreaerllrLindlLdlsrieag<-*
pe + + ++l++i++ ++rl++ + d+L lsr g
CP001644_2 461 PESGgvE-----TRLLRIIRDNVRRLDQVVADVLMLSRRPRG 497

CP001644_3182: domain 1 of 1, from 310 to 375: score 58.9, E = 2.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+a+++H+LRTPLta++++a+ + + +++ +++
CP001644_3 310 AQRTFIADAAHQLRTPLTALKLHADRAVD----------AKTLDDA- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l +++ a+r rL n+lL+l+r+e g
CP001644_3 346 ----------RPALLELQSGANRAVRLSNQLLTLARAEPG 375

CP001644_1490: domain 1 of 1, from 208 to 273: score 58.7, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++H+L+TPL++I++ +el+l+ e + e +
CP001644_1 208 ARKRFFADAAHQLKTPLAVIQAQSELALR----------EPDGERI- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le ++ +++ r +++lL lsr+e+
CP001644_1 244 ----------RRHLEPLHGTVRQAARGVQQLLSLSRLETD 273

CP001644_3252: domain 1 of 1, from 220 to 285: score 56.5, E = 9.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++HELRTPL+a+++ ae L +++s++
CP001644_3 220 AQHRFVADAAHELRTPLSALSLQAERLGQ---------AAMSPDA-- 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l t+++ +er + L+++lL+l+r+++
CP001644_3 256 ----------QARLGTLRQGIERSRGLLEQLLTLARAQEA 285

CP001644_2296: domain 1 of 1, from 234 to 299: score 55.2, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sH+LR+P++aI +++e+L++ ++se
CP001644_2 234 EKSRFLAAASHDLRQPVHAIVLLVEALRA---------RNQSESL-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e + + a ++ L + lLdls++e+
CP001644_2 270 ----------APLVEQLASGAATIDLLFRSLLDLSKLESR 299

CP001644_2823: domain 1 of 1, from 252 to 317: score 55.1, E = 2.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s+fla++sH+LRTPL+++++ ae +l+ e ++ +
CP001644_2 252 AQSQFLADASHQLRTPLAVLLTQAEYALR----------ETDPVRV- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ i+ +++ +rL +lL l+r+++
CP001644_2 288 ----------RESLSAIIARLQSTNRLTTQLLALARARHA 317

CP001644_2753: domain 1 of 1, from 277 to 343: score 51.9, E = 1.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla lsHELRTPLt I+++++lL+ +++l++
CP001644_2 277 AKDHFLAVLSHELRTPLTPILTAVHLLEL--------RQDLPAYA-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+++r ae rLi+dlLd++ i g
CP001644_2 314 ----------VAQLEVVRRNAELEARLIDDLLDITGIARG 343

CP001644_3235: domain 1 of 1, from 259 to 324: score 49.6, E = 8.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++H++RTPL+ + + +++ t++++
CP001644_3 259 TQKRFIADAAHQMRTPLAILDTQMQVAAQ---------TNADAAL-- 294

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++ +++ l +LindlL ls++ea
CP001644_3 295 ----------HEVLRAARTSTRNLADLINDLLLLSQAEAS 324

CP001644_1541: domain 1 of 1, from 240 to 299: score 49.0, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +la++sH+LRTPLt +r+ +e+ ++ +e++
CP001644_1 240 DRAVMLAGISHDLRTPLTRLRLETEM------------SPVDEQT-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++e+++++i ++Ld++r +
CP001644_1 273 -------------RELMVADIEQMDAIIGQFLDYARPNGE 299

CP001644_2524: domain 1 of 1, from 141 to 214: score 46.8, E = 5.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e la l+HEL+TPL+aI+ +a +++++d te ++ +
CP001644_2 141 AIDETLAFLAHELNTPLAAISNFARGIRMRVD-----QTEPTPGAL- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+ ++ +++++ a+++l+ i +L r g
CP001644_2 182 -------PEIGRAADRVQDNARYCLSVIATFLNSVRNTYG 214

CP001644_3300: domain 1 of 1, from 574 to 646: score 45.9, E = 9.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+++l +++ ++ ++e +
CP001644_3 574 AWGEVARRLAHEIKNPLTPIQLSAERLEMKL---SPKLSDTDAEVL- 616

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ ti +++ + r+++d++d++r
CP001644_3 617 ----------RRGATTIVNQVAAMKRMVDDFRDYARTPPA 646

CP001644_2486: domain 1 of 1, from 309 to 377: score 43.6, E = 4.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++++sHE+RTPL +I g a+ L + +++l++e +
CP001644_2 309 LQRNFVSMASHEFRTPLGVIDGQAQRLMR-------MRDALPPEAL- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +i+ +++r+ +L + lLd s
CP001644_2 348 ----------EERCGKIRAAVQRMTHLMDHLLDSSHWLDS 377

CP001644_2751: domain 1 of 1, from 524 to 592: score 41.4, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL I gyaelL e + ++ se
CP001644_2 524 ELEAFSYSVSHDLRAPLRHIAGYAELLDE------MEGQHVSERG-- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l+ti ++++ +L++dlL++s+++ g
CP001644_2 563 ----------RHFLQTISESSRFAGKLVDDLLTFSQMGRG 592

CP001644_1591: domain 1 of 1, from 613 to 683: score 29.7, E = 3.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+aI y+ + +l +++ ++e+++
CP001644_1 613 TMGEMASSLAHELNQPLAAINNYCMGAVGRL-----KSGRSTPEELI 654

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p le+ +a r +i++++ + + ++
CP001644_1 655 PV-----------LEKTSAQAVRAGTIIQRIRGFVKRSQP 683

CP001644_0190: domain 1 of 1, from 436 to 499: score 28.7, E = 7.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++ HEL++PL+a+r++++ + l++++ ++ +
CP001644_0 436 ALGQMAAGITHELNQPLAALRTFSDNTRI-----LLERGQHGAAT-- 475

peLRledpeyreyletilreaerllrLindlLdls<-*
+ l+ i + +er+ ++ +l ++
CP001644_0 476 -----------DNLQAIADLTERMGKITAQLKLFA 499

CP001644_2523: domain 1 of 1, from 220 to 288: score 27.8, E = 1.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + a+l HE+++P++ ++++ +++e t+++++ +
CP001644_2 220 AIGTLSAGLLHEINNPVNFCLMAIAVAQE-------DPTAKGSPML- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l +++ +r +++++dl +++ +
CP001644_2 259 ----------LECLTDAKEGMQRVQHIVSDLKTFAYRSPE 288


Histogram of all scores:
score obs exp (one = represents 12 sequences)
----- --- ---
-14 6 0|=
-13 50 2|*====
-12 161 77|======*=======
-11 317 404|=========================== *
-10 547 750|============================================== *
-9 675 774|========================================================= *
-8 608 579|================================================*==
-7 421 365|==============================*=====
-6 257 210|=================*====
-5 144 115|=========*==
-4 73 61|=====*=
-3 62 32|==*===
-2 26 17|=*=
-1 16 8|*=
0 9 4|*
1 7 2|*
2 3 1|*
3 2 0|=
> 4 27 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 241.0348
P(chi-square) = 2.652e-315

Total sequences searched: 3411

Whole sequence top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: