Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

5 accessions found for Ralstonia pickettii 12D  

Data for CP001647  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001647.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001647_0001 CDS_1505-135 64.1 5.5e-19 1
CP001647_0227 CDS_225118-223721 60.2 6.8e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001647_0001 1/1 235 301 .. 1 87 [] 64.1 5.5e-19
CP001647_0227 1/1 237 303 .. 1 87 [] 60.2 6.8e-18

Alignments of top-scoring domains:
CP001647_0001: domain 1 of 1, from 235 to 301: score 64.1, E = 5.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f +++HELRTP+t +++ +e++l +++ + +
CP001647_0 235 RLTDFSTDIAHELRTPITNLLTQTEVALS---------QTREPAK-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l + +e++rl r+++d+L l+++e++
CP001647_0 271 ---------YRDVLASNVEELQRLARMVSDMLYLAKMEHN 301

CP001647_0227: domain 1 of 1, from 237 to 303: score 60.2, E = 6.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +++HELRTP+t +++ +e+ l +++ +
CP001647_0 237 RLSDFSTDIAHELRTPITNLLTQTEVVLS---------QPREGTK-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+ l + +e++rl r+++d+L l+++e+
CP001647_0 273 ---------YRDVLTSNAEELQRLARMVSDMLYLAKMEHS 303


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-14 3 0|===
-13 10 0|==========
-12 20 6|=====*==============
-11 26 32|========================== *
-10 50 60|================================================== *
-9 52 62|==================================================== *
-8 48 46|=============================================*==
-7 30 29|============================*=
-6 12 17|============ *
-5 10 9|========*=
-4 7 4|===*===
-3 2 2|=*
-2 1 1|*
-1 1 0|=
0 1 0|=
1 0 0|
> 2 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 36.3585
P(chi-square) = 6.203e-06

Total sequences searched: 276

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: