Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

1 accessions found for Desulfovibrio salexigens DSM 2638  

Data for CP001649  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001649.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001649_1706 CDS_1879528-1878410 146.7 1.4e-41 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001649_1706 1/1 182 263 .. 1 94 [] 146.7 1.4e-41

Alignments of top-scoring domains:
CP001649_1706: domain 1 of 1, from 182 to 263: score 146.7, E = 1.4e-41
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQvISSLL+LQ+ +++d+e+ ++LrE+q+RV+S
CP001649_1 182 EIHHRVKNNLQVISSLLSLQSGYTDDKEA-----SNLLRECQHRVRS 223

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
m+++HE+LY+sedl+++d+ eY L++ L++sy+v+++ +
CP001649_1 224 MSMLHEKLYRSEDLSRIDMNEYALTLINFLLRSYSVDGK-------V 263


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 9 0|=
-13 31 23|=*=
-12 141 250|========== *
-11 837 696|==============================================*=========
-10 777 901|==================================================== *
-9 738 760|==================================================*
-8 536 510|=================================*==
-7 267 303|================== *
-6 267 168|===========*======
-5 93 90|=====*=
-4 49 48|===*
-3 29 25|=*
-2 16 13|*=
-1 6 6|*
0 4 3|*
1 2 1|*
2 0 0|
3 1 0|=
4 1 0|=
> 5 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 159.8316
P(chi-square) = 5.684e-28

Total sequences searched: 3807

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: