Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
35 projects found  

1 accessions found for Desulfovibrio salexigens DSM 2638  

Data for CP001649  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001649.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001649_1830 CDS_2016629-2018698 74.8 8.4e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001649_1830 1/1 483 551 .. 1 70 [] 74.8 8.4e-22

Alignments of top-scoring domains:
CP001649_1830: domain 1 of 1, from 483 to 551: score 74.8, E = 8.4e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+R+ARELHDsv Q+L ai+ +++a r + ++ ++a e+l++
CP001649_1 483 ERQRLARELHDSVTQALYAITFCSDAAVRSF--ESGKSgAAIEQLKA 527

irelarealaevRrllgdLRpaal<-*
++++a+++++++R l+ dL+p++l
CP001649_1 528 LQGMAQQGMRDMRSLIFDLHPPEL 551


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 22 0|==
-13 85 0|=======
-12 157 42|==*=========
-11 261 348|=================== *
-10 691 809|================================================== *
-9 786 919|========================================================= *
-8 568 708|========================================= *
-7 444 445|===============================*
-6 317 252|=================*=====
-5 213 135|=========*======
-4 95 70|====*==
-3 63 36|==*==
-2 43 18|=*==
-1 22 9|*=
0 17 4|*=
1 10 2|*
2 10 1|*
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 533.3336
P(chi-square) = 0

Total sequences searched: 3807

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: