Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Zunongwangia profunda SM-A87  

Data for CP001650  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001650.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001650_2167 CDS_2357788-2355878 41.0 9.9e-12 2
CP001650_0421 CDS_448492-450246 36.7 1.8e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001650_2167 1/2 443 466 .. 1 24 [. 37.1 1.4e-10
CP001650_0421 1/1 386 447 .. 1 64 [. 36.7 1.8e-10

Alignments of top-scoring domains:
CP001650_2167: domain 1 of 2, from 443 to 466: score 37.1, E = 1.4e-10
*->ERaRIARELHDsvgQsLsaiklql<-*
ER+RIA+ELHDs+g +L+aiklq+
CP001650_2 443 ERERIAQELHDSIGGNLAAIKLQM 466

CP001650_0421: domain 1 of 1, from 386 to 447: score 36.7, E = 1.8e-10
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA +LHD +g L+ +kl+ + +++ + d+ +e +e +++
CP001650_0 386 ERQRIANDLHDNLGGLLATLKLHFQNLKTKT--DRLRDEQDELFKTT 430

relarealaevRrllgd<-*
l++e++++vR+ +++
CP001650_0 431 NSLLDETYQQVRNYAHQ 447


Histogram of all scores:
score obs exp (one = represents 18 sequences)
----- --- ---
-15 4 0|=
-14 124 0|=======
-13 269 0|===============
-12 359 51|==*=================
-11 448 426|=======================*=
-10 1009 989|======================================================*==
-9 943 1123|===================================================== *
-8 638 866|==================================== *
-7 372 544|===================== *
-6 208 308|============ *
-5 144 165|======== *
-4 58 86|====*
-3 29 44|==*
-2 14 22|=*
-1 17 11|*
0 7 5|*
1 3 2|*
2 0 1|*
3 0 0|
> 4 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2014.8827
P(chi-square) = 0

Total sequences searched: 4653

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: