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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Dickeya dadantii Ech703  

Data for CP001654  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001654.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001654_0838 CDS_966727-963971 98.6 1.3e-27 1
CP001654_2870 CDS_3399754-3398432 89.0 7e-25 1
CP001654_3070 CDS_3665379-3661255 82.9 3.6e-23 1
CP001654_1026 CDS_1192952-1195756 81.8 7.8e-23 1
CP001654_3570 CDS_4216344-4214005 75.2 5.7e-21 1
CP001654_2728 CDS_3235237-3233804 69.7 2e-19 1
CP001654_3785 CDS_4458552-4459922 64.4 6.5e-18 1
CP001654_3657 CDS_4312744-4311299 63.5 1.1e-17 1
CP001654_3139 CDS_3747748-3746306 61.0 5.8e-17 1
CP001654_3895 CDS_4590831-4591880 60.1 1e-16 1
CP001654_2664 CDS_3166680-3168041 55.5 2.2e-15 1
CP001654_0321 CDS_372615-373973 54.8 3.4e-15 1
CP001654_1113 CDS_1292558-1289826 53.1 1e-14 1
CP001654_0386 CDS_440516-439431 45.8 1.2e-12 1
CP001654_1730 CDS_2087095-2085788 42.5 1e-11 1
CP001654_2537 CDS_3025274-3023874 40.4 4.1e-11 1
CP001654_3077 CDS_3678610-3677402 33.1 4.7e-09 1
CP001654_1028 CDS_1199147-1196478 27.7 1.6e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001654_0838 1/1 287 352 .. 1 87 [] 98.6 1.3e-27
CP001654_2870 1/1 203 269 .. 1 87 [] 89.0 7e-25
CP001654_3070 1/1 649 714 .. 1 87 [] 82.9 3.6e-23
CP001654_1026 1/1 449 514 .. 1 87 [] 81.8 7.8e-23
CP001654_3570 1/1 282 347 .. 1 87 [] 75.2 5.7e-21
CP001654_2728 1/1 252 320 .. 1 87 [] 69.7 2e-19
CP001654_3785 1/1 238 300 .. 1 87 [] 64.4 6.5e-18
CP001654_3657 1/1 249 315 .. 1 87 [] 63.5 1.1e-17
CP001654_3139 1/1 257 320 .. 1 87 [] 61.0 5.8e-17
CP001654_3895 1/1 129 186 .. 1 79 [. 60.1 1e-16
CP001654_2664 1/1 230 294 .. 1 87 [] 55.5 2.2e-15
CP001654_0321 1/1 233 293 .. 1 87 [] 54.8 3.4e-15
CP001654_1113 1/1 667 734 .. 1 87 [] 53.1 1e-14
CP001654_0386 1/1 144 204 .. 1 87 [] 45.8 1.2e-12
CP001654_1730 1/1 211 271 .. 1 87 [] 42.5 1e-11
CP001654_2537 1/1 244 309 .. 1 87 [] 40.4 4.1e-11
CP001654_3077 1/1 171 234 .. 1 87 [] 33.1 4.7e-09
CP001654_1028 1/1 441 506 .. 1 87 [] 27.7 1.6e-07

Alignments of top-scoring domains:
CP001654_0838: domain 1 of 1, from 287 to 352: score 98.6, E = 1.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t+l++ q
CP001654_0 287 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TPLTPTQ-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+r+a+ ll++ind+Ld+s++eag
CP001654_0 323 ----------QDYLQTIERSANNLLNIINDVLDFSKLEAG 352

CP001654_2870: domain 1 of 1, from 203 to 269: score 89.0, E = 7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + + l+ +
CP001654_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMND---------DSLDGALQ- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r++ L+ +lL+lsriea
CP001654_2 240 ----------AKALQTMQEQTRRMDGLVKQLLTLSRIEAA 269

CP001654_3070: domain 1 of 1, from 649 to 714: score 82.9, E = 3.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTP++a++g+++lLl+ +l++ q
CP001654_3 649 AKTMFLANMSHEIRTPMNAVLGMLQLLLR---------NNLTPRQ-- 684

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++ +a +ll L+nd+Ld+s+i+ag
CP001654_3 685 ----------HAFASKAHIAATSLLGLLNDILDYSKIDAG 714

CP001654_1026: domain 1 of 1, from 449 to 514: score 81.8, E = 7.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ ls +
CP001654_1 449 SKSMFLATVSHELRTPLYGIIGNLDLLRT---------KSLSRDA-- 484

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e +++++ ll++i+d+Ld+s+ie++
CP001654_1 485 ----------NRLVEAMQNSSSLLLKIISDILDFSKIESE 514

CP001654_3570: domain 1 of 1, from 282 to 347: score 75.2, E = 5.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP001654_3 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------THLDAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ ++ + e
CP001654_3 318 ----------QKYLKTIHVSAITLGNIFNDVIEMDKQERR 347

CP001654_2728: domain 1 of 1, from 252 to 320: score 69.7, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r aelL +e+ ++l+++q
CP001654_2 252 QRHEFLRHISHELKTPLASLREGAELLADEVA------GPLTDDQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++++++++ll+Li++lLd+ r a
CP001654_2 291 ----------KDVVAILDNSSRHLLQLIEQLLDYNRKLAD 320

CP001654_3785: domain 1 of 1, from 238 to 300: score 64.4, E = 6.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ lL++ +
CP001654_3 238 AQQRLLSDISHELRTPLTRLQLATALLRR---------RQGENNE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ e++rl+++indlL lsr ++
CP001654_3 274 -------------LNRIETETQRLDSMINDLLVLSRNQHK 300

CP001654_3657: domain 1 of 1, from 249 to 315: score 63.5, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+l+HE+RTP+ a++g+++++l ++++ e+
CP001654_3 249 RLTQFSADLAHEIRTPIGALMGHCQVALY---------QPRNVEE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l+ + e+er++r+++++L l+r+ ++
CP001654_3 285 ---------YETLLSDNIVELERISRMVENILFLARASHE 315

CP001654_3139: domain 1 of 1, from 257 to 320: score 61.0, E = 5.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l++ ++d
CP001654_3 257 AREQLLHDVSHELRSPLARLQLAIGLARQNQD--------------- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ l++i+reaer++++i +lL+lsr+e+
CP001654_3 289 --------NVENSLQRIEREAERMDKMIGELLTLSRAENA 320

CP001654_3895: domain 1 of 1, from 129 to 186: score 60.1, E = 1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001654_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001654_3 165 ----------MEYTKVIIEQADRLRNLVDRLL 186

CP001654_2664: domain 1 of 1, from 230 to 294: score 55.5, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e+L++++ ++
CP001654_2 230 SRRAFMADVSHELRTPLAVLRGELEALQDGV-------RRPDASA-- 267

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ e+e l +L+ndl +ls + g
CP001654_2 268 -------------FHSLQMEVEILTKLVNDLHQLSLSDLG 294

CP001654_0321: domain 1 of 1, from 233 to 293: score 54.8, E = 3.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
CP001654_0 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSK--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP001654_0 264 ----------DYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP001654_1113: domain 1 of 1, from 667 to 734: score 53.1, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
CP001654_1 667 LRNSLLAALSHDLRTPLTVLFGQAEILTLNL-------ASAGSPY-- 704

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++++ rL+n+lLd++ri++
CP001654_1 705 ----------APHANQLRQQIINTTRLVNNLLDMARIQSD 734

CP001654_0386: domain 1 of 1, from 144 to 204: score 45.8, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++n++HELRTPL+++r+ +el + ++ + +
CP001654_0 144 RDRQFASNVAHELRTPLAGVRLSLELHEQ--------LHHIDCQP-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l + i++lL l+r ++
CP001654_0 181 ----------------LIKRVDYLTKVIEQLLLLARVGNA 204

CP001654_1730: domain 1 of 1, from 211 to 271: score 42.5, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ n++HELRTPL +r + + + ++l++++
CP001654_1 211 SKKQLIDNIAHELRTPLVRLRYRLAM--N---------ENLTSDE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i r++ +l++Li++lL+++r++ +
CP001654_1 245 -------------EEAINRDVGQLEALIDELLTYARLDRP 271

CP001654_2537: domain 1 of 1, from 244 to 309: score 40.4, E = 4.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+++H+LRTPL+++++ ++++l+ +++++
CP001654_2 244 RQERFGADAAHQLRTPLAVLKTQVDVALK---------SKQPARW-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++ + +L ++lL+lsr++a+
CP001654_2 280 ----------HDSLAGMRVTLAKTINLTERLLQLSRLRAQ 309

CP001654_3077: domain 1 of 1, from 171 to 234: score 33.1, E = 4.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +a ++HELR PLta +g ++ + + + +e
CP001654_3 171 LRASHVA-MAHELRSPLTAAMGRLQGMID---------GVFEPEP-- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + + + +l+rL++dl ls + ag
CP001654_3 206 -----------RQLQMVMNPLGHLNRLVDDLHLLSMASAG 234

CP001654_1028: domain 1 of 1, from 441 to 506: score 27.7, E = 1.6e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +++ +ls EL++PL+++ +a+ L+ t++s+ q
CP001654_1 441 ARHQLFQHLSQELKQPLSTVHQLAQSLRG---------TDASAAQ-- 476

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ ea rL +++ +r+e++
CP001654_1 477 ----------QTTIQHLITEAADAVRLMENIALQTRLENQ 506


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 2 0|=
-14 11 0|=
-13 43 2|*===
-12 148 90|======*=====
-11 328 470|========================== *
-10 616 873|================================================ *
-9 749 901|==========================================================*
-8 716 674|===================================================*====
-7 529 425|================================*========
-6 319 244|==================*======
-5 203 134|==========*=====
-4 110 71|=====*===
-3 66 37|==*===
-2 53 19|=*===
-1 25 10|*=
0 12 5|*
1 5 2|*
2 3 1|*
3 8 0|=
4 2 0|=
5 0 0|
6 0 0|
> 7 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 390.4327
P(chi-square) = 0

Total sequences searched: 3970

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: