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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Dickeya zeae Ech1591  

Data for CP001655  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001655.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001655_0798 CDS_941131-938363 93.3 4.4e-26 1
CP001655_3033 CDS_3540306-3538984 88.2 1.2e-24 1
CP001655_2946 CDS_3437312-3434445 80.7 1.6e-22 1
CP001655_3695 CDS_4287512-4285173 75.9 3.6e-21 1
CP001655_3938 CDS_4553963-4555333 68.4 5e-19 2
CP001655_1061 CDS_1251368-1252801 65.4 3.6e-18 1
CP001655_3200 CDS_3725660-3724263 62.1 3e-17 1
CP001655_4060 CDS_4692747-4693796 60.1 1.1e-16 1
CP001655_0243 CDS_298285-299697 54.8 3.6e-15 1
CP001655_2858 CDS_3336488-3339217 54.0 5.8e-15 1
CP001655_1175 CDS_1365358-1364000 52.6 1.4e-14 1
CP001655_4080 CDS_4719384-4720733 51.6 2.8e-14 1
CP001655_1746 CDS_2051768-2050413 47.4 4.5e-13 1
CP001655_0305 CDS_365805-364648 45.4 1.6e-12 1
CP001655_1333 CDS_1552922-1554313 43.5 5.5e-12 1
CP001655_3150 CDS_3668216-3667047 40.1 5.2e-11 1
CP001655_2703 CDS_3147262-3146138 33.1 5.1e-09 1
CP001655_2944 CDS_3431059-3433728 32.9 5.7e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001655_0798 1/1 290 355 .. 1 87 [] 93.3 4.4e-26
CP001655_3033 1/1 203 269 .. 1 87 [] 88.2 1.2e-24
CP001655_2946 1/1 471 536 .. 1 87 [] 80.7 1.6e-22
CP001655_3695 1/1 282 347 .. 1 87 [] 75.9 3.6e-21
CP001655_3938 1/2 238 300 .. 1 87 [] 65.7 2.9e-18
CP001655_1061 1/1 252 320 .. 1 87 [] 65.4 3.6e-18
CP001655_3200 1/1 246 309 .. 1 87 [] 62.1 3e-17
CP001655_4060 1/1 129 186 .. 1 79 [. 60.1 1.1e-16
CP001655_0243 1/1 233 293 .. 1 87 [] 54.8 3.6e-15
CP001655_2858 1/1 672 739 .. 1 87 [] 54.0 5.8e-15
CP001655_1175 1/1 230 294 .. 1 87 [] 52.6 1.4e-14
CP001655_4080 1/1 236 302 .. 1 87 [] 51.6 2.8e-14
CP001655_1746 1/1 211 271 .. 1 87 [] 47.4 4.5e-13
CP001655_0305 1/1 148 208 .. 1 87 [] 45.4 1.6e-12
CP001655_1333 1/1 244 309 .. 1 87 [] 43.5 5.5e-12
CP001655_3150 1/1 176 233 .. 8 87 .] 40.1 5.2e-11
CP001655_2703 1/1 136 200 .. 1 87 [] 33.1 5.1e-09
CP001655_2944 1/1 441 506 .. 1 87 [] 32.9 5.7e-09

Alignments of top-scoring domains:
CP001655_0798: domain 1 of 1, from 290 to 355: score 93.3, E = 4.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t l+ q
CP001655_0 290 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TQLTTTQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+r+a+ ll++ind+Ld+s++eag
CP001655_0 326 ----------KDYLQTIERSANNLLNIINDVLDFSKLEAG 355

CP001655_3033: domain 1 of 1, from 203 to 269: score 88.2, E = 1.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + + l+ +
CP001655_3 203 ARRNFFANVSHELRTPLTVLQGYLEMMSD---------ESLDGALQ- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t++++++r++ L+++lL+lsriea
CP001655_3 240 ----------SKALHTMQEQTRRMDGLVRQLLTLSRIEAA 269

CP001655_2946: domain 1 of 1, from 471 to 536: score 80.7, E = 1.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ l+++
CP001655_2 471 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KSLPSDA-- 506

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++++ ll++i+d+Ld+s+ie++
CP001655_2 507 ----------NRLVTAMQNSSALLLKIISDILDFSKIESE 536

CP001655_3695: domain 1 of 1, from 282 to 347: score 75.9, E = 3.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP001655_3 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------THLDAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ ++ + e
CP001655_3 318 ----------QKYLKTIHVSAITLGNIFNDIIEMDKQERR 347

CP001655_3938: domain 1 of 2, from 238 to 300: score 65.7, E = 2.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ lL++++ +e +e
CP001655_3 238 AQQRLLSDISHELRTPLTRLQLATALLRRRQ-------GEGNE---- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ e++rl+ +indlL lsr ++
CP001655_3 274 -------------LNRIETETQRLDGMINDLLVLSRNQHK 300

CP001655_1061: domain 1 of 1, from 252 to 320: score 65.4, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl++lsHEL+TPL+++r a lL +e+ + l+++q
CP001655_1 252 QRHEFLRHLSHELKTPLASLREGAALLADEV------VGSLTDDQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++l++Li++lLd+ r a
CP001655_1 291 ----------KEVVAILDNSSRHLQQLIEQLLDYNRKLAD 320

CP001655_3200: domain 1 of 1, from 246 to 309: score 62.1, E = 3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l++ +++ +
CP001655_3 246 AREQLLHDVSHELRSPLARLQLAIGLARQ------------NPDNV- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++i+reaer++++i ++L+lsr+e++
CP001655_3 280 ----------ENALQRIEREAERMDKMIGEVLTLSRAENN 309

CP001655_4060: domain 1 of 1, from 129 to 186: score 60.1, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001655_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001655_4 165 ----------MEYTKVIIEQADRLRNLVDRLL 186

CP001655_0243: domain 1 of 1, from 233 to 293: score 54.8, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e+
CP001655_0 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSQ--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e+i +++e ++++i+++ d+ r +++
CP001655_0 264 ----------EYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP001655_2858: domain 1 of 1, from 672 to 739: score 54.0, E = 5.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l +e s+
CP001655_2 672 LRNSLLAALSHDLRTPLTVLFGQAEILTLNLA------SEGSP---- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ + i++ + + rL+n+lLd++ri++
CP001655_2 709 ---------YAPQASQIRQHILSTTRLVNNLLDMARIQSD 739

CP001655_1175: domain 1 of 1, from 230 to 294: score 52.6, E = 1.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e+L++ + + +++
CP001655_1 230 SRRAFMADISHELRTPLAVLRGELEALQD---------GVRRPDT-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++ e+ l +L++dl +ls +
CP001655_1 266 -----------AAFSSLQAEVALLTKLVDDLHQLSLSDLS 294

CP001655_4080: domain 1 of 1, from 236 to 302: score 51.6, E = 2.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+++++HELR PL+a++ ae+++ + ++ r
CP001655_4 236 HERRFTSDAAHELRSPLAALKVQAEVAQL---------AQDDAAVR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l + ++r +rL+++lL+lsr++ag
CP001655_4 273 ----------QHALTNLGLGIDRASRLVDQLLTLSRLDAG 302

CP001655_1746: domain 1 of 1, from 211 to 271: score 47.4, E = 4.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ n++HELRTPL +r + + + l++e++
CP001655_1 211 SKKQLIDNIAHELRTPLVRLRYRLAMSDN-----------LTDEEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e i r++ +l++Li++lL+++r++ +
CP001655_1 246 --------------EAINRDVGQLEALIDELLTYARLDRP 271

CP001655_0305: domain 1 of 1, from 148 to 208: score 45.4, E = 1.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++n++HELRTPL++Ir+ +el + ++ + +
CP001655_0 148 RDRLFASNVAHELRTPLAGIRLSLELHEQ--------THHIDCQP-- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l + i++lL l+r +++
CP001655_0 185 ----------------LIKRVDHLTKTIEQLLLLARVGNE 208

CP001655_1333: domain 1 of 1, from 244 to 309: score 43.5, E = 5.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+++H+LRTPL+++++ + ++l+ + q
CP001655_1 244 RQERFGADAAHQLRTPLAVLKTQVGVALN----------SSQPAQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ l + ++ +L ++lL+lsr++a+
CP001655_1 279 ---------WRDSLTGMSATLDDTIQLTDRLLQLSRLRAQ 309

CP001655_3150: domain 1 of 1, from 176 to 233: score 40.1, E = 5.2e-11
*->nlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRled
+++HELR PLta +g ++ +l+ + ++++
CP001655_3 176 AMAHELRSPLTAAMGRLQGMLD---------GVFPADT--------- 204

peyreyletilreaerllrLindlLdlsrieag<-*
+ l+ + ++ l+rLi+dl ls + ag
CP001655_3 205 ----RQLQMVMNQMLNLNRLIEDLHLLSMASAG 233

CP001655_2703: domain 1 of 1, from 136 to 200: score 33.1, E = 5.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t +rg ++ L e + ++
CP001655_2 136 ERAFWNAAIAHELRTPVTILRGRLQGLTE---------GVFEPDI-- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +l ++e l rLi+dl+ +e+g
CP001655_2 172 -----------GLFRNLLMQVEGLGRLIEDLRVVGLAESG 200

CP001655_2944: domain 1 of 1, from 441 to 506: score 32.9, E = 5.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++nls E+++PL+a+ +a +L++ t+ ++eq
CP001655_2 441 VRKRLFRNLSQEFKQPLSAVHQLALALRK---------TDHPAEQ-- 476

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++t++ e+ + rL +++ +r+e+
CP001655_2 477 ----------QKMIQTLIAETSSAIRLMENIALQARLETV 506


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-14 7 0|=
-13 56 3|*===
-12 176 95|======*======
-11 364 493|========================== *
-10 673 915|================================================= *
-9 775 945|======================================================== *
-8 690 707|==================================================*
-7 557 446|===============================*========
-6 352 256|==================*=======
-5 204 140|=========*=====
-4 111 75|=====*==
-3 71 39|==*===
-2 36 20|=*=
-1 29 10|*==
0 12 5|*
1 7 2|*
2 9 1|*
3 6 0|=
4 0 0|
5 3 0|=
6 2 0|=
7 1 0|=
8 0 0|
9 1 0|=
10 0 0|
11 0 0|
> 12 21 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 378.4693
P(chi-square) = 0

Total sequences searched: 4163

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: