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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pectobacterium carotovorum subsp. carotovorum PC1  

Data for CP001657  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001657.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001657_0995 CDS_1179432-1180754 92.6 7e-26 1
CP001657_3344 CDS_3827171-3829966 89.8 4.4e-25 1
CP001657_1091 CDS_1292123-1294978 80.5 1.9e-22 1
CP001657_0297 CDS_350423-352792 74.9 7.3e-21 1
CP001657_3011 CDS_3439784-3438348 69.1 3.1e-19 1
CP001657_0134 CDS_162352-160982 66.4 1.9e-18 1
CP001657_2931 CDS_3357388-3358755 61.0 6.5e-17 1
CP001657_4172 CDS_4772634-4773683 60.3 9.6e-17 1
CP001657_3849 CDS_4385407-4384046 56.7 1.1e-15 1
CP001657_1200 CDS_1420434-1417687 55.2 2.7e-15 1
CP001657_2667 CDS_3064717-3063311 53.7 7.5e-15 1
CP001657_4192 CDS_4798709-4800058 53.2 9.9e-15 1
CP001657_0763 CDS_903594-904964 51.9 2.4e-14 1
CP001657_2660 CDS_3056147-3057346 48.7 1.9e-13 1
CP001657_3789 CDS_4318531-4319619 47.2 5.3e-13 1
CP001657_2251 CDS_2616406-2617719 42.6 1e-11 1
CP001657_2106 CDS_2434752-2435987 34.0 2.9e-09 1
CP001657_0655 CDS_768458-769957 28.3 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001657_0995 1/1 203 269 .. 1 87 [] 92.6 7e-26
CP001657_3344 1/1 292 357 .. 1 87 [] 89.8 4.4e-25
CP001657_1091 1/1 468 533 .. 1 87 [] 80.5 1.9e-22
CP001657_0297 1/1 282 347 .. 1 87 [] 74.9 7.3e-21
CP001657_3011 1/1 252 320 .. 1 87 [] 69.1 3.1e-19
CP001657_0134 1/1 238 300 .. 1 87 [] 66.4 1.9e-18
CP001657_2931 1/1 232 296 .. 1 87 [] 61.0 6.5e-17
CP001657_4172 1/1 129 186 .. 1 79 [. 60.3 9.6e-17
CP001657_3849 1/1 233 293 .. 1 87 [] 56.7 1.1e-15
CP001657_1200 1/1 671 738 .. 1 87 [] 55.2 2.7e-15
CP001657_2667 1/1 242 307 .. 1 87 [] 53.7 7.5e-15
CP001657_4192 1/1 236 302 .. 1 87 [] 53.2 9.9e-15
CP001657_0763 1/1 237 300 .. 1 87 [] 51.9 2.4e-14
CP001657_2660 1/1 173 237 .. 1 87 [] 48.7 1.9e-13
CP001657_3789 1/1 141 201 .. 1 87 [] 47.2 5.3e-13
CP001657_2251 1/1 211 271 .. 1 87 [] 42.6 1e-11
CP001657_2106 1/1 202 268 .. 1 87 [] 34.0 2.9e-09
CP001657_0655 1/1 281 347 .. 1 87 [] 28.3 1.2e-07

Alignments of top-scoring domains:
CP001657_0995: domain 1 of 1, from 203 to 269: score 92.6, E = 7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l++ r
CP001657_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------ETLDAALR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t++++++r++ L+ +lL+lsriea
CP001657_0 240 ----------GKALNTMQEQTRRMDGLVKQLLTLSRIEAA 269

CP001657_3344: domain 1 of 1, from 292 to 357: score 89.8, E = 4.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l+ t+l+ q
CP001657_3 292 IKSEFLANMSHELRTPLNGVIGFTRQTLK---------TPLNTTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl ti+r+a+ ll++ind+Ld+s++eag
CP001657_3 328 ----------TDYLLTIERSANNLLNIINDVLDFSKLEAG 357

CP001657_1091: domain 1 of 1, from 468 to 533: score 80.5, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ l+ +
CP001657_1 468 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KSLPQDA-- 503

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP001657_1 504 ----------NRLVAAMNNSSSLLLKIISDILDFSKIESE 533

CP001657_0297: domain 1 of 1, from 282 to 347: score 74.9, E = 7.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f++++sHELRTPL++I g++ +Ll+ t l++eq
CP001657_0 282 EKTTFISTISHELRTPLNGIVGLSRILLD---------TQLDPEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ ++ + e
CP001657_0 318 ----------QKYLKTIHVSAITLGNIFNDVIEMDKQERR 347

CP001657_3011: domain 1 of 1, from 252 to 320: score 69.1, E = 3.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+++q
CP001657_3 252 QRHEFLRHISHELKTPLASLREGTELLADEV------VGPLTADQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++++ll+Li++lLd+ r a
CP001657_3 291 ----------KEVVAILDSSSRHLLQLIDQLLDYNRKLAD 320

CP001657_0134: domain 1 of 1, from 238 to 300: score 66.4, E = 1.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l+++sHELRTPLt +++++ lL++++ +e +e
CP001657_0 238 AQQRLLSDISHELRTPLTRLQLATALLRRRQ-------GEGNE---- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ e++rl+++indlL lsr ++
CP001657_0 274 -------------LNRIETETQRLDSMINDLLVLSRNQHK 300

CP001657_2931: domain 1 of 1, from 232 to 296: score 61.0, E = 6.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sHELRTPL+++rg +e+L++++ + ++
CP001657_2 232 SRRAFMADVSHELRTPLAVLRGELEALQDGV-------RKPDAHS-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++++e+ l +L++dl +l+ + g
CP001657_2 270 -------------LHSLQSEVTTLTKLVDDLHQLTLSDRG 296

CP001657_4172: domain 1 of 1, from 129 to 186: score 60.3, E = 9.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP001657_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP001657_4 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP001657_3849: domain 1 of 1, from 233 to 293: score 56.7, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
CP001657_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGK--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++Ld+ r +++
CP001657_3 264 ----------DYLAESINKDIEECNAIIEQFLDYLRTGQE 293

CP001657_1200: domain 1 of 1, from 671 to 738: score 55.2, E = 2.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l +e s+
CP001657_1 671 LRNSLLAALSHDLRTPLTVLFGQAEILTLNLA------SEGSP---- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ + i++ + rL+n+lLd++ri++
CP001657_1 708 ---------YAQQANQIRQHILNTTRLVNNLLDMARIQSD 738

CP001657_2667: domain 1 of 1, from 242 to 307: score 53.7, E = 7.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL+a+r ++e+L+ s+ q
CP001657_2 242 RERVFIADAAHELRTPLAAMRINVEALQS---------YISSDNQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l i+r+ r rL+n+lL l ea
CP001657_2 278 ----------QALLAGIIRSNSRAARLVNQLLLLMHSEAR 307

CP001657_4192: domain 1 of 1, from 236 to 302: score 53.2, E = 9.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + +e r
CP001657_4 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------ARDDEAMR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l +++ ++r rL+++lL+lsr++a+
CP001657_4 273 ----------HHALLNLDKGIDRATRLVDQLLTLSRLDAE 302

CP001657_0763: domain 1 of 1, from 237 to 300: score 51.9, E = 2.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l++ +++ +
CP001657_0 237 AREQLLHDVSHELRSPLARLQLAIGLIRQ------------NPDNV- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+rea ++++i +lL+lsr e+
CP001657_0 271 ----------ENSLQRIEREALLMDKMIGELLTLSRTEHS 300

CP001657_2660: domain 1 of 1, from 173 to 237: score 48.7, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e a+l+HELRTPL+a +g ++ +l++++ + +
CP001657_2 173 ELRESSAALAHELRTPLNAAMGRVQGMLDDVF----------PRD-- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +++++e+l++ i+dl ls ++ag
CP001657_2 208 ----------KSQLTMVIKQLEQLNHVIQDLHFLSLARAG 237

CP001657_3789: domain 1 of 1, from 141 to 201: score 47.2, E = 5.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a+++HELRTPL++Ir+++el + q+
CP001657_3 141 RDRQFTADVAHELRTPLAGIRLHLELHQQ---------------QH- 171

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++ + + +++lL l+r +++
CP001657_3 172 ----------QIDCSSLIKRIDKMVKTVEQLLLLARVGQE 201

CP001657_2251: domain 1 of 1, from 211 to 271: score 42.6, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ n++HELRTPL +r + + + l+e+++
CP001657_2 211 SKKQLIDNIAHELRTPLVRLRYRLAMSDN-----------LTEDEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP001657_2 246 --------------QALNRDIGQLEALIDELLTYARLDRP 271

CP001657_2106: domain 1 of 1, from 202 to 268: score 34.0, E = 2.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPL+ I g+ae++ l+ +l
CP001657_2 202 RERCFVSDASHELRTPLAIIGGAAETIVH----------QLPTGSHL 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i r ++ ++r++ lL lsr +
CP001657_2 239 ----------MPSAERIVRTTQEMQRQLTCLLLLSRDPQT 268

CP001657_0655: domain 1 of 1, from 281 to 347: score 28.3, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++HELRTPLt ++ + L e ++ l+ +
CP001657_0 281 QVRNTSSHVAHELRTPLTHLQNRLFNLTE--------RAGLDNDV-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ + +e++ +l L + ++ + ie+g
CP001657_0 318 ----------RDELNLAVDEVHKILGLFRTVMRIGEIESG 347


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 1 0|=
-14 14 0|=
-13 53 3|*===
-12 159 97|======*=====
-11 386 503|============================ *
-10 743 933|====================================================== *
-9 796 964|========================================================= *
-8 708 721|===================================================*
-7 538 455|================================*======
-6 326 261|==================*=====
-5 208 143|==========*====
-4 127 76|=====*====
-3 63 40|==*==
-2 39 21|=*=
-1 31 11|*==
0 10 5|*
1 11 3|*
2 7 1|*
3 2 0|=
4 4 0|=
> 5 20 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 293.3907
P(chi-square) = 0

Total sequences searched: 4246

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: