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Classification of phyla is from NCBI page
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1 accessions found for Methylotenera mobilis JLW8  

Data for CP001672  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001672.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001672_0644 CDS_685417-681725 93.6 2e-26 1
CP001672_1220 CDS_1328040-1330577 86.6 2e-24 1
CP001672_1676 CDS_1840414-1842384 79.4 2.1e-22 1
CP001672_0497 CDS_533891-532593 74.8 4.2e-21 1
CP001672_1447 CDS_1597698-1594954 66.4 1e-18 1
CP001672_0812 CDS_874768-873713 66.2 1.2e-18 1
CP001672_2204 CDS_2388464-2390068 65.6 1.7e-18 1
CP001672_2131 CDS_2314756-2315850 58.8 1.5e-16 1
CP001672_0043 CDS_45705-47426 56.0 8.8e-16 2
CP001672_1321 CDS_1453115-1454518 54.7 2.1e-15 1
CP001672_1855 CDS_2034744-2036051 46.8 3.6e-13 1
CP001672_2170 CDS_2357843-2355714 42.1 7.7e-12 1
CP001672_0125 CDS_134740-136359 40.9 1.8e-11 1
CP001672_2031 CDS_2219781-2221265 36.3 3.4e-10 1
CP001672_0535 CDS_569851-568571 33.8 1.8e-09 1
CP001672_1735 CDS_1911047-1909539 33.7 1.9e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001672_0644 1/1 661 726 .. 1 87 [] 93.6 2e-26
CP001672_1220 1/1 605 673 .. 1 87 [] 86.6 2e-24
CP001672_1676 1/1 284 349 .. 1 87 [] 79.4 2.1e-22
CP001672_0497 1/1 205 272 .. 1 87 [] 74.8 4.2e-21
CP001672_1447 1/1 683 749 .. 1 87 [] 66.4 1e-18
CP001672_0812 1/1 120 186 .. 1 87 [] 66.2 1.2e-18
CP001672_2204 1/1 320 385 .. 1 87 [] 65.6 1.7e-18
CP001672_2131 1/1 131 188 .. 1 79 [. 58.8 1.5e-16
CP001672_0043 2/2 342 408 .. 1 87 [] 55.5 1.3e-15
CP001672_1321 1/1 249 312 .. 1 87 [] 54.7 2.1e-15
CP001672_1855 1/1 227 288 .. 1 87 [] 46.8 3.6e-13
CP001672_2170 1/1 485 557 .. 1 87 [] 42.1 7.7e-12
CP001672_0125 1/1 311 379 .. 1 87 [] 40.9 1.8e-11
CP001672_2031 1/1 270 321 .. 1 73 [. 36.3 3.4e-10
CP001672_0535 1/1 208 270 .. 1 87 [] 33.8 1.8e-09
CP001672_1735 1/1 270 338 .. 1 87 [] 33.7 1.9e-09

Alignments of top-scoring domains:
CP001672_0644: domain 1 of 1, from 661 to 726: score 93.6, E = 2e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTP++aI+g++el+l+ te+ ++q
CP001672_0 661 VKSTFLANMSHEIRTPMNAIIGFTELMLD---------TEMKPDQ-- 696

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ti ++a++ll+L+nd+Ld +++e g
CP001672_0 697 ----------QNYVSTINNSAKSLLHLLNDILDSAKLEKG 726

CP001672_1220: domain 1 of 1, from 605 to 673: score 86.6, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHELRTPL++I+g++ ++l +l ++l+ eq
CP001672_1 605 IKSAFLATMSHELRTPLNSIIGFTGIILQGLA------GPLNNEQ-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++ +a++ll+Lind+Ld+s+ieag
CP001672_1 644 ----------TKQLGMVRGSARHLLELINDVLDISKIEAG 673

CP001672_1676: domain 1 of 1, from 284 to 349: score 79.4, E = 2.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fl+ sHELRTPL+aI+g+a+lL++ +l++ ++
CP001672_1 284 EKSIFLSRTSHELRTPLNAILGFAHLLET----------DLTDLKQ- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ i ++++ll+Li+++Ld++rie+g
CP001672_1 320 ----------KESLSMISAAGKHLLKLIDQVLDIARIESG 349

CP001672_0497: domain 1 of 1, from 205 to 272: score 74.8, E = 4.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt++ g++e+L + +++ ++
CP001672_0 205 MRRDFIANVSHELRTPLTVVGGFIETLSD-------MEGAIPSSI-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +++++ r++rLi+dlL+ls ie++
CP001672_0 243 ----------SSYFGMMQDQTTRMRRLIEDLLTLSHIESN 272

CP001672_1447: domain 1 of 1, from 683 to 749: score 66.4, E = 1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+++sH+L+TPLt+I+++a L+ +te +++
CP001672_1 683 LRNSVLSAISHDLNTPLTTIIAAAGWLKQ--------ETEINDKR-- 719

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey++ + +++ r+ +L+ +lLd++r+++g
CP001672_1 720 ----------YEYVSMLNEQSIRMKNLVVNLLDMARLQSG 749

CP001672_0812: domain 1 of 1, from 120 to 186: score 66.2, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefl ++ HELR+P++ I g++elLl+ te + +
CP001672_0 120 MKSEFLYSATHELRNPIAIIFGFSELLLN---------TEFNRDAS- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++leti+++a+ l++L n+lLd++rie+
CP001672_0 157 ----------IDILETIHEQAKELNHLTNELLDIARIESR 186

CP001672_2204: domain 1 of 1, from 320 to 385: score 65.6, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++an++HE+R+PL+aI+ + +lL+e ++ + +
CP001672_2 320 ALGRLTANIAHEIRNPLSAISHANQLLQE---------ENFGTQN-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i + ++r++++i d+L+l r +
CP001672_2 356 ----------NRMLQIIADNIQRIDKIIKDVLELNRRDRT 385

CP001672_2131: domain 1 of 1, from 131 to 188: score 58.8, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+l+nl+HE+R+PL ++rg+a+lL+ el+++ +
CP001672_2 131 ANAELLRNLAHEIRNPLGGLRGAAQLLEH----------ELPSPSL- 166

peLRledpeyreyletilreaerllrLindlL<-*
rey+++i++ea+rl++L ++lL
CP001672_2 167 ----------REYTQVIIKEADRLQALMDRLL 188

CP001672_0043: domain 2 of 2, from 342 to 408: score 55.5, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a++sHE+RTPL +r a++L + + +ls+e
CP001672_0 342 VAGEMAAAMSHEIRTPLGILRSSAQVLAR--------EKTLSPEG-- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + i+ e+erl++L++ l d +r +++
CP001672_0 379 ----------QEVVAFIQMETERLNKLVSTLVDSARPRQP 408

CP001672_1321: domain 1 of 1, from 249 to 312: score 54.7, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++sHELR PL+ I++++ l ++ +
CP001672_1 249 SQTKLLHHVSHELRSPLARIQMALGLVTQ-----------APHKI-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++i ea+r++ Li +lL+lsr+e+g
CP001672_1 283 ----------TEFIDRITLEANRMDGLIGELLTLSRLESG 312

CP001672_1855: domain 1 of 1, from 227 to 288: score 46.8, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ la++sH++RTPL+ +r+++e+L e e
CP001672_1 227 ERTLILAGVSHDIRTPLARLRLAVEMLPE-------------QEC-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +++ ++++i ++Ld+ r +g
CP001672_1 259 ----------GYLKSGMVQDIADMDNIIHQFLDFVRGTEG 288

CP001672_2170: domain 1 of 1, from 485 to 557: score 42.1, E = 7.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae + +l ++ls+ ++
CP001672_2 485 AWGEVARRLAHEIKNPLTPIQLSAERMAHKLH------SKLSAADAE 525

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +eti ++++ l +++n++ +++r ++
CP001672_2 526 IL--------QRSTETIVNQVDALKKMVNEFSEYARSPTP 557

CP001672_0125: domain 1 of 1, from 311 to 379: score 40.9, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L PL + y++lL +++ ++l+ +
CP001672_0 311 ELEQFAYVASHDLQEPLRMVASYTQLLARRYK------DKLDQDA-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ + + a r+++Li dlL++sri++
CP001672_0 350 ----------NEFIGYAVDGATRMQALIIDLLTMSRIGTH 379

CP001672_2031: domain 1 of 1, from 270 to 321: score 36.3, E = 3.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +l+H +R+PL++Ir++a+++ + ++ ++e+
CP001672_2 270 AQGLLVPMLAHNIRNPLASIRATAQVMDD---------PNNNAET-- 305

peLRledpeyreyletilreaerllr<-*
+e ++ i++ ++rl+r
CP001672_2 306 ----------QESIDGIINTVDRLER 321

CP001672_0535: domain 1 of 1, from 208 to 270: score 33.8, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL+++ ++ L +l +eq
CP001672_0 208 SLGTLAASAAHELGTPLATMAVISKELALDL--------SNQPEQ-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i+ +++r+ ++++ + +ag
CP001672_0 245 ----------LQQLAIIRTQIDRCKEILSSI----TRDAG 270

CP001672_1735: domain 1 of 1, from 270 to 338: score 33.7, E = 1.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ +sH+L+ PL +I ++ ++e+l +++++ +
CP001672_1 270 ELATFAYIASHDLKSPLRGIFQISQWIEEDL-------GKADSASI- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++r+++L++dlL +sr++
CP001672_1 309 ----------PSHMNLLRGRLRRMEHLLDDLLAYSRAGRL 338


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 4 0|=
-14 8 0|=
-13 30 1|*===
-12 97 53|======*======
-11 245 277|=============================== *
-10 395 514|================================================== *
-9 441 530|======================================================== *
-8 396 397|=================================================*
-7 301 250|===============================*======
-6 158 144|=================*==
-5 115 79|=========*=====
-4 64 42|=====*==
-3 31 22|==*=
-2 12 11|=*
-1 11 6|*=
0 4 3|*
1 3 1|*
2 1 0|=
3 2 0|=
4 0 0|
5 1 0|=
> 6 19 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 128.1917
P(chi-square) = 4.041e-22

Total sequences searched: 2338

Whole sequence top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: