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41 projects found  

1 accessions found for Flavobacteriaceae bacterium 3519-10  

Data for CP001673  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001673.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001673_1744 CDS_1916348-1912452 103.6 3.2e-29 1
CP001673_0749 CDS_804199-806946 97.3 2e-27 1
CP001673_1677 CDS_1830489-1834091 85.9 3.2e-24 1
CP001673_0981 CDS_1057804-1055147 83.1 2e-23 1
CP001673_0036 CDS_33796-31553 73.9 8.3e-21 1
CP001673_1092 CDS_1196968-1195238 72.7 1.8e-20 1
CP001673_1676 CDS_1829377-1830492 66.3 1.2e-18 1
CP001673_1521 CDS_1677644-1675725 59.3 1.2e-16 1
CP001673_1747 CDS_1919618-1918584 59.2 1.2e-16 1
CP001673_2376 CDS_2604156-2602597 54.4 2.8e-15 1
CP001673_2058 CDS_2266925-2264736 49.2 8.6e-14 1
CP001673_2116 CDS_2323012-2324466 27.2 1.5e-07 1
CP001673_1542 CDS_1698969-1697800 26.8 1.8e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001673_1744 1/1 670 735 .. 1 87 [] 103.6 3.2e-29
CP001673_0749 1/1 402 467 .. 1 87 [] 97.3 2e-27
CP001673_1677 1/1 532 598 .. 1 87 [] 85.9 3.2e-24
CP001673_0981 1/1 658 725 .. 1 87 [] 83.1 2e-23
CP001673_0036 1/1 519 587 .. 1 87 [] 73.9 8.3e-21
CP001673_1092 1/1 352 420 .. 1 87 [] 72.7 1.8e-20
CP001673_1676 1/1 147 215 .. 1 87 [] 66.3 1.2e-18
CP001673_1521 1/1 413 481 .. 1 87 [] 59.3 1.2e-16
CP001673_1747 1/1 118 185 .. 1 87 [] 59.2 1.2e-16
CP001673_2376 1/1 290 358 .. 1 87 [] 54.4 2.8e-15
CP001673_2058 1/1 512 578 .. 1 87 [] 49.2 8.6e-14
CP001673_2116 1/1 269 322 .. 1 76 [. 27.2 1.5e-07
CP001673_1542 1/1 170 228 .. 1 78 [. 26.8 1.8e-07

Alignments of top-scoring domains:
CP001673_1744: domain 1 of 1, from 670 to 735: score 103.6, E = 3.2e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHE+RTPL++++g+++lLl+ t+l+e q
CP001673_1 670 AKSEFLANMSHEIRTPLNGVIGFSDLLLK---------TPLNEMQ-- 705

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ i +++e+ll +ind+Ld+s+ie+g
CP001673_1 706 ----------TQYLNYINESGESLLTIINDILDFSKIESG 735

CP001673_0749: domain 1 of 1, from 402 to 467: score 97.3, E = 2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+an+sHE+RTPL++I+g++elLle t+l++ q
CP001673_0 402 LKSEFVANMSHEIRTPLNGIIGFTELLLE---------TNLDDTQ-- 437

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl++i +++ +l ++ind+Ld+s++e
CP001673_0 438 ----------RQYLDIINQSGVSLYSIINDILDFSKLEKH 467

CP001673_1677: domain 1 of 1, from 532 to 598: score 85.9, E = 3.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+++++l+ e +e +eq
CP001673_1 532 YKSEFLANMSHELRTPLNSILLLSKLMTE---------SEDLDEQ-- 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey +++++++ ll Li+++Ldls+ie+g
CP001673_1 568 ---------YVEYAAVMQSSGQGLLTLIDEILDLSKIESG 598

CP001673_0981: domain 1 of 1, from 658 to 725: score 83.1, E = 2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl +++HELRTP+taIr+++elL + d++++ e +
CP001673_0 658 QKDDFLDSVAHELRTPITAIRATSELLMD--------DEDMPTEIK- 695

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le i++e++rl ++ind+L l ++eag
CP001673_0 696 ----------KDFLENIISESDRLAEIINDILYLDKLEAG 725

CP001673_0036: domain 1 of 1, from 519 to 587: score 73.9, E = 8.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f+ ++sHEL+TP+t+I+gy++lL++ t ++++++
CP001673_0 519 QKDDFIKMASHELKTPVTTIKGYVQLLKR---------TRKDSDDKF 556

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ti+++++ l+ Li dlLd+sr+e+g
CP001673_0 557 ---------LVNSLNTIENQVNNLSVLIGDLLDISRMENG 587

CP001673_1092: domain 1 of 1, from 352 to 420: score 72.7, E = 1.8e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f+ ++sHE++TP++++++ ++lL++ + ++l+ eq
CP001673_1 352 AKTNFIGTVSHEFKTPISSMKMSIQLLEN------DHVGTLNTEQ-- 390

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++e i+++a+rll++ ++lL l++ e+g
CP001673_1 391 ----------KELVENIKDDANRLLKITRELLNLTQVESG 420

CP001673_1676: domain 1 of 1, from 147 to 215: score 66.3, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef++ +sHEL+TP+t+I+gy++lL++ ++ + e++
CP001673_1 147 KKDEFISIASHELKTPMTSIKGYIQLLERSI-------EKNDIETT- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++e l+ L+ dlLd+s+ie+g
CP001673_1 186 ----------KIRLGKVQNQIEKLNLLVADLLDISKIESG 215

CP001673_1521: domain 1 of 1, from 413 to 481: score 59.3, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl +sHEL+TPLt++++ya++L++ l ++ +++++
CP001673_1 413 QKDTFLGIASHELKTPLTSLKLYAQVLERML-------AKSGDQKH- 451

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++ ++ l +Li dlLd ++i ag
CP001673_1 452 ----------ADLAKKMDLQVVKLTSLIADLLDVTKINAG 481

CP001673_1747: domain 1 of 1, from 118 to 185: score 59.2, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e l n+sHEL+TPL +I+gy+e+L + +g ++l +
CP001673_1 118 YRKEYLGNVSHELKTPLFSIQGYVETLID------GGVENLAIRD-- 156

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yle+i++++erll+++ dl + + e+g
CP001673_1 157 -----------KYLERIDKSVERLLNIVKDLDMINQYESG 185

CP001673_2376: domain 1 of 1, from 290 to 358: score 54.4, E = 2.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ n+sHE++TPL++I+ +++ L + d ++ +++
CP001673_2 290 VKTDFINNMSHEFKTPLATISVATDSLAN--------DKIATNPEK- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ y i++e r+ ++++++L +s++e +
CP001673_2 328 ---------VKYYSGLIKQENLRMKKQVENVLNMSKLERN 358

CP001673_2058: domain 1 of 1, from 512 to 578: score 49.2, E = 8.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+L TPLt+++++a+lL++ ++ + +++
CP001673_2 512 ELDSFSYTISHDLGTPLTVMKLNAQLLER---------AHHDNPEV- 548

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +il+e+ ++++ + +L+lsr+ +
CP001673_2 549 ----------GKRVASILQEILGMEDMMRGVLQLSRAKST 578

CP001673_2116: domain 1 of 1, from 269 to 322: score 27.2, E = 1.5e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ ++HE ++PLt ++++++ ++ + ++e+
CP001673_2 269 AWREMAKQVAHEVKNPLTPMKLTIQNFER----------KFNPED-- 303

peLRledpeyreyletilreaerllrLin<-*
++ ++++ ++ l ++i+
CP001673_2 304 ----------PDIHNKVKTLSKTLVEQID 322

CP001673_1542: domain 1 of 1, from 170 to 228: score 26.8, E = 1.8e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sH++++PLt + ++++l ++ ++ +e++
CP001673_1 170 DYEILLDTISHDIKNPLTNLVLAIDLFKR--------VSPNDEKK-- 206

peLRledpeyreyletilreaerllrLindl<-*
++ +l+++++++ + i dl
CP001673_1 207 ---------FQSLLKIVDSALSTMHGVITDL 228


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 2 0|=
-14 32 0|====
-13 45 1|*====
-12 142 57|======*=========
-11 300 300|=================================*
-10 489 557|======================================================= *
-9 502 575|======================================================== *
-8 377 430|========================================== *
-7 278 271|==============================*
-6 163 156|=================*=
-5 75 85|=========*
-4 60 45|====*==
-3 22 24|==*
-2 17 12|=*
-1 7 6|*
0 4 3|*
1 0 1|*
2 1 0|=
3 1 0|=
4 1 0|=
5 0 0|
> 6 16 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 154.3424
P(chi-square) = 1.929e-27

Total sequences searched: 2534

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: