Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
41 projects found  

1 accessions found for Flavobacteriaceae bacterium 3519-10  

Data for CP001673  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001673.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001673_1779 CDS_1948395-1946656 41.9 5.9e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001673_1779 1/1 387 434 .. 1 53 [. 41.9 5.9e-12

Alignments of top-scoring domains:
CP001673_1779: domain 1 of 1, from 387 to 434: score 41.9, E = 5.9e-12
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E +HRVKNNL+vI SL+ Q + ++d ++ ++ R+ +
CP001673_1 387 ELNHRVKNNLAVILSLVGFQRDETRDVLY-----KNKFEQLYARINT 428

mAliHE<-*
+Al H+
CP001673_1 429 IALAHQ 434


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 9 0|=
-14 22 0|===
-13 40 15|=*==
-12 107 166|=========== *
-11 585 463|==============================================*============
-10 481 599|================================================= *
-9 490 506|================================================= *
-8 283 339|============================= *
-7 210 201|====================*
-6 185 112|===========*=======
-5 54 60|=====*
-4 37 32|===*
-3 14 16|=*
-2 5 8|*
-1 6 4|*
0 3 2|*
1 1 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 174.1558
P(chi-square) = 1.645e-31

Total sequences searched: 2534

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: