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Thermotogae
Classification of phyla is from NCBI page
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76 projects found  

3 accessions found for Methylovorus sp. SIP3-4  

Data for CP001674  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001674.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001674_2253 CDS_2392174-2393526 84.0 1.3e-23 1
CP001674_0709 CDS_741213-744668 77.7 7.9e-22 1
CP001674_0883 CDS_934639-933197 69.5 1.6e-19 1
CP001674_0231 CDS_258768-257179 66.2 1.4e-18 1
CP001674_2461 CDS_2605185-2603770 64.1 5.6e-18 1
CP001674_0396 CDS_409333-407930 63.8 6.8e-18 1
CP001674_1055 CDS_1115858-1113138 62.9 1.2e-17 1
CP001674_1251 CDS_1350174-1351628 61.2 3.6e-17 1
CP001674_1585 CDS_1703128-1700936 56.9 6e-16 1
CP001674_2613 CDS_2763143-2764822 56.0 1.1e-15 1
CP001674_2358 CDS_2499150-2500496 55.6 1.4e-15 1
CP001674_2202 CDS_2335933-2337312 55.4 1.7e-15 1
CP001674_2482 CDS_2627332-2628414 55.0 2e-15 1
CP001674_2106 CDS_2235858-2237177 48.1 1.9e-13 1
CP001674_0189 CDS_216592-218718 44.7 1.7e-12 1
CP001674_0534 CDS_556415-555033 36.8 3.1e-10 1
CP001674_2333 CDS_2465691-2467157 34.3 1.5e-09 1
CP001674_1159 CDS_1232738-1234537 29.0 5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001674_2253 1/1 211 278 .. 1 87 [] 84.0 1.3e-23
CP001674_0709 1/1 695 761 .. 1 87 [] 77.7 7.9e-22
CP001674_0883 1/1 252 320 .. 1 87 [] 69.5 1.6e-19
CP001674_0231 1/1 315 380 .. 1 87 [] 66.2 1.4e-18
CP001674_2461 1/1 241 306 .. 1 87 [] 64.1 5.6e-18
CP001674_0396 1/1 241 307 .. 1 87 [] 63.8 6.8e-18
CP001674_1055 1/1 674 740 .. 1 87 [] 62.9 1.2e-17
CP001674_1251 1/1 264 327 .. 1 87 [] 61.2 3.6e-17
CP001674_1585 1/1 500 564 .. 1 87 [] 56.9 6e-16
CP001674_2613 1/1 343 409 .. 1 87 [] 56.0 1.1e-15
CP001674_2358 1/1 222 287 .. 1 87 [] 55.6 1.4e-15
CP001674_2202 1/1 234 302 .. 1 87 [] 55.4 1.7e-15
CP001674_2482 1/1 131 188 .. 1 79 [. 55.0 2e-15
CP001674_2106 1/1 227 288 .. 1 87 [] 48.1 1.9e-13
CP001674_0189 1/1 486 558 .. 1 87 [] 44.7 1.7e-12
CP001674_0534 1/1 227 289 .. 1 87 [] 36.8 3.1e-10
CP001674_2333 1/1 269 320 .. 1 73 [. 34.3 1.5e-09
CP001674_1159 1/1 389 416 .. 1 28 [. 29.0 5e-08

Alignments of top-scoring domains:
CP001674_2253: domain 1 of 1, from 211 to 278: score 84.0, E = 1.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt++ g++e+L + d++ ++ +
CP001674_2 211 MRRDFIANVSHELRTPLTVVGGFLETLSD-------MDGAVPDST-- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ +++++ r++rL++dlL+ls++e+
CP001674_2 249 ----------RSYFDMMQEQTGRMRRLVEDLLTLSQLENS 278

CP001674_0709: domain 1 of 1, from 695 to 761: score 77.7, E = 7.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL++I+gya+lL +++ ++
CP001674_0 695 AKSRYITGISHELRTPLNSILGYAQLLDNDV--------SIPAAR-- 731

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++i+r++e+ll+Li+ Ld++rie+g
CP001674_0 732 ----------QPAIRVIRRSGEHLLSLIEGTLDIARIESG 761

CP001674_0883: domain 1 of 1, from 252 to 320: score 69.5, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fl+++sHEL+TPLtaIr +elL + + ++ls++q
CP001674_0 252 QKQRFLRHVSHELKTPLTAIREGSELLSD------EIGGALSPQQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++++++ rl+++i++lL +s + +
CP001674_0 291 ----------KEIANILRESSMRLQKMIENLLNYSAVQYQ 320

CP001674_0231: domain 1 of 1, from 315 to 380: score 66.2, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++an++HE+R+PL++I+ + +lL+e + ++
CP001674_0 315 ALGKLTANIAHEIRNPLSSISHANQLLQE---------DITDPGS-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+++ + +erl++++ d+L+l r +
CP001674_0 351 ----------QKLLRIVADNVERLDHIVTDVLELNRRDRT 380

CP001674_2461: domain 1 of 1, from 241 to 306: score 64.1, E = 5.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+++H+LRTPL+++++ +el++ e ++e +
CP001674_2 241 SQNRFIADAAHQLRTPLAGVMAQTELAQY----------ETNPEAL- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l i ++erl +++n+lL l+r+e +
CP001674_2 277 ----------QKSLANIAMSTERLVHMVNQLLILARAEPE 306

CP001674_0396: domain 1 of 1, from 241 to 307: score 63.8, E = 6.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++sef ++++HELRTP++ +++ ++++l +++s+ +
CP001674_0 241 RLSEFSSDIAHELRTPVSNLMTQSHVALS---------QARSAGE-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e+l + ++e erl+r+i d+L l+++++g
CP001674_0 277 ---------YQEILYSNIEEYERLSRMIADMLFLAKADNG 307

CP001674_1055: domain 1 of 1, from 674 to 740: score 62.9, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sH+LRTPLt+++g a+ L+ ++++++
CP001674_1 674 LRNSLLSAISHDLRTPLTSLLGIADQLRQ--------APDMPSDR-- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ let++++a r+++L+ +lLd++r++ag
CP001674_1 711 ----------HAQLETLYDQAFRMQQLVVNLLDMARLQAG 740

CP001674_1251: domain 1 of 1, from 264 to 327: score 61.2, E = 3.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s++l ++sHELR PL+ +++++ l++ s+e++
CP001674_1 264 GQSRLLHHVSHELRSPLARMQMAIGLARQ------------SPEKV- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+re+ r+++L+ +lL +sr+e+g
CP001674_1 298 ----------SSSLERIERESIRMDKLVGELLAFSRLESG 327

CP001674_1585: domain 1 of 1, from 500 to 564: score 56.9, E = 6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++a+l H+LR PL++I ++a++L++ ++ +
CP001674_1 500 HRIQLMAMLGHDLRDPLNSITMAAQMLEM---------QDGASSN-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i++++ r+ rL+ ++Ld+sr++ag
CP001674_1 536 -----------KLGERIKNSSMRMKRLVHQVLDMSRLQAG 564

CP001674_2613: domain 1 of 1, from 343 to 409: score 56.0, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a++sHE RTPL +r a++Ll+ +++lsee
CP001674_2 343 VVGEMAAAMSHEVRTPLGILRSSAQVLLR--------EPTLSEEG-- 379

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re i++e+erl++L++ l d +r + +
CP001674_2 380 ----------REVCGFIISETERLNKLVSTLIDSARPRLP 409

CP001674_2358: domain 1 of 1, from 222 to 287: score 55.6, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a+++HELRTP+ta+++ + L +++se
CP001674_2 222 AQKRFIADAAHELRTPMTALSLQSGRLAQ---------ADMSETA-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ +++ + r ++L+++lL ++r++++
CP001674_2 258 ----------RERLSMLRQGIARSNKLLDQLLSFARAQTP 287

CP001674_2202: domain 1 of 1, from 234 to 302: score 55.4, E = 1.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL aI gy+ + +e++ +++l++e
CP001674_2 234 ELESFSYSVSHDLRAPLRAIDGYSRMFEEDY------SDKLDAEG-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++ ++ + +Li+dlL+++r +
CP001674_2 273 ----------LRLLSVVRTNSRKMGQLIDDLLQFARSGRK 302

CP001674_2482: domain 1 of 1, from 131 to 188: score 55.0, E = 2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a e+l+nl+HE+R+PL ++rg+a+lL+ el+ +
CP001674_2 131 ANAELLRNLAHEIRNPLGGLRGAAQLLEH----------ELPQVNL- 166

peLRledpeyreyletilreaerllrLindlL<-*
rey+++i++ea+rl++L ++lL
CP001674_2 167 ----------REYTQVIIKEADRLQSLMDRLL 188

CP001674_2106: domain 1 of 1, from 227 to 288: score 48.1, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPL+ +r+ +e+L + el++
CP001674_2 227 ERTLLLAGVSHDLRTPLARLRLSVEMLPN----------ELGDSL-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++++i ++Ld+ r +g
CP001674_2 262 -------------KNGMIQDITDMDNIIHQFLDFVRGVEG 288

CP001674_0189: domain 1 of 1, from 486 to 558: score 44.7, E = 1.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ l+HE+++PLt I++ ae L+ +l +a+ ++ +++ +
CP001674_0 486 AWGEVARRLAHEIKNPLTPIQLSAERLEHKL---AAKLETDDADML- 528

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++++ti ++ + ++n++ +++r+ a
CP001674_0 529 ----------RRATNTIVTQVAAMKTMVNEFSEYARAPAL 558

CP001674_0534: domain 1 of 1, from 227 to 289: score 36.8, E = 3.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL+++ +e L+ t+ + ++
CP001674_0 227 ALGALAAGAAHELGTPLATMAVVTEELRQ---------THTDNAEL- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ +++e++r+ +++ l ag
CP001674_0 264 ----------TESLDLLRKEINRCKGILSSL----SGSAG 289

CP001674_2333: domain 1 of 1, from 269 to 320: score 34.3, E = 1.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +l+H +R+PL++Ir+ a+++ +el+ ++
CP001674_2 269 TLGLLVPMLAHNIRNPLASIRASAQVADS---------AELDQDT-- 304

peLRledpeyreyletilreaerllr<-*
re l+ i++ ++rl+r
CP001674_2 305 ----------RESLRDIISTVDRLER 320

CP001674_1159: domain 1 of 1, from 389 to 416: score 29.0, E = 5e-08
*->akseflanlsHELRTPLtaIrgyaelLl<-*
++s f+a++ HEL+TPL++Ir+ +++++
CP001674_1 389 EQSYFMAMITHELKTPLSVIRMSLDAMQ 416


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 3 0|=
-14 11 0|==
-13 51 2|*=====
-12 147 64|=======*=========
-11 278 334|=============================== *
-10 471 619|===================================================== *
-9 511 639|========================================================= *
-8 458 479|=================================================== *
-7 322 301|=================================*==
-6 209 173|===================*====
-5 147 95|==========*======
-4 86 51|=====*====
-3 46 26|==*===
-2 23 14|=*=
-1 16 7|*=
0 9 3|*
1 2 2|*
2 5 1|*
3 1 0|=
4 2 0|=
5 0 0|
> 6 20 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 267.4226
P(chi-square) = 0

Total sequences searched: 2818

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: