Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Candidatus Liberibacter asiaticus str. psy62  

Data for CP001677  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001677.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001677_0503 CDS_565377-566864 94.9 4.1e-27 1
CP001677_0784 CDS_884096-881796 82.4 1.4e-23 1
CP001677_0292 CDS_314434-316896 76.4 7e-22 1
CP001677_0377 CDS_424002-426380 66.6 4.1e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001677_0503 1/1 248 317 .. 1 87 [] 94.9 4.1e-27
CP001677_0784 1/1 542 611 .. 1 87 [] 82.4 1.4e-23
CP001677_0292 1/1 584 653 .. 1 87 [] 76.4 7e-22
CP001677_0377 1/1 568 636 .. 1 87 [] 66.6 4.1e-19

Alignments of top-scoring domains:
CP001677_0503: domain 1 of 1, from 248 to 317: score 94.9, E = 4.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e+++ e ++l+ e+
CP001677_0 248 AKSRFLASMSHELRTPLNAILGFSEVIELETM------GPLNNET-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey+ i+r++++ll+Lin++Ldlsrieag
CP001677_0 287 ---------YKEYIGDIHRSGQHLLNLINEILDLSRIEAG 317

CP001677_0784: domain 1 of 1, from 542 to 611: score 82.4, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla +sHELRTPL+aI+g++e++++ + +el++ +
CP001677_0 542 TKSEFLAKMSHELRTPLNAILGFSEVIKK------EIFGELGSVK-- 580

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i+ ++++ll++in++L++s+ie++
CP001677_0 581 ---------YYEYAQDIHYSGQHLLNMINNILEMSKIETE 611

CP001677_0292: domain 1 of 1, from 584 to 653: score 76.4, E = 7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla +sHE+RTPLtaI+g++e++++ ++ ++l+ +
CP001677_0 584 HKSDFLARVSHEIRTPLTAIIGFSEVIKN------QRFGPLGNPR-- 622

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ey + i+r+++ l+++ndlLd+s+ie+g
CP001677_0 623 ---------YIEYANYIDRSGNLVLDIVNDLLDISKIESG 653

CP001677_0377: domain 1 of 1, from 568 to 636: score 66.6, E = 4.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f+ ++s ELR PLt I+g+++lL++ + + l+++q
CP001677_0 568 IKNSFVQHVSYELRSPLTNIIGFTDLLKT------SKLGSLNSKQ-- 606

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e i ++ ll+L+nd+Ldl+ +ag
CP001677_0 607 ----------SQYVEYISASSTILLNLVNDILDLATVDAG 636


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-14 7 0|==
-13 41 0|===========
-12 86 25|======*===============
-11 129 131|================================*
-10 192 243|================================================ *
-9 195 251|================================================= *
-8 180 188|============================================= *
-7 110 118|============================ *
-6 72 68|================*=
-5 49 37|=========*===
-4 22 20|====*=
-3 11 10|==*
-2 6 5|=*
-1 2 2|*
0 1 1|*
> 1 6 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 174.0313
P(chi-square) = 4.055e-32

Total sequences searched: 1109

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: