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2 accessions found for Hirschia baltica ATCC 49814  

Data for CP001678  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001678.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001678_3067 CDS_3407601-3406084 91.8 8.9e-26 1
CP001678_0213 CDS_232292-235123 91.4 1.1e-25 1
CP001678_2620 CDS_2883658-2880632 89.6 3.6e-25 1
CP001678_0338 CDS_367051-368463 86.4 2.9e-24 1
CP001678_1275 CDS_1351445-1349187 85.9 4.1e-24 1
CP001678_2349 CDS_2523824-2526403 75.4 3.9e-21 1
CP001678_0194 CDS_204206-206650 74.9 5.5e-21 1
CP001678_1224 CDS_1300827-1302251 70.3 1.1e-19 1
CP001678_1134 CDS_1218606-1216798 66.0 1.8e-18 1
CP001678_0188 CDS_198779-200401 59.6 1.2e-16 1
CP001678_1668 CDS_1795389-1791928 57.6 4.3e-16 1
CP001678_2695 CDS_2987601-2984239 57.0 6.5e-16 1
CP001678_1062 CDS_1141258-1142976 56.3 9.8e-16 1
CP001678_1647 CDS_1770636-1768414 44.2 2.7e-12 1
CP001678_0313 CDS_342748-341423 43.6 3.9e-12 1
CP001678_2992 CDS_3319979-3318588 39.2 6.8e-11 1
CP001678_1649 CDS_1773268-1772195 37.1 2.7e-10 1
CP001678_2910 CDS_3241776-3238912 35.8 6.3e-10 1
CP001678_1269 CDS_1342300-1343697 33.0 3.9e-09 1
CP001678_0878 CDS_939914-941440 30.2 2.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001678_3067 1/1 23 88 .. 1 87 [] 91.8 8.9e-26
CP001678_0213 1/1 278 343 .. 1 87 [] 91.4 1.1e-25
CP001678_2620 1/1 316 381 .. 1 87 [] 89.6 3.6e-25
CP001678_0338 1/1 188 255 .. 1 87 [] 86.4 2.9e-24
CP001678_1275 1/1 515 584 .. 1 87 [] 85.9 4.1e-24
CP001678_2349 1/1 487 552 .. 1 87 [] 75.4 3.9e-21
CP001678_0194 1/1 575 643 .. 1 87 [] 74.9 5.5e-21
CP001678_1224 1/1 235 303 .. 1 87 [] 70.3 1.1e-19
CP001678_1134 1/1 229 294 .. 1 87 [] 66.0 1.8e-18
CP001678_0188 1/1 306 371 .. 1 87 [] 59.6 1.2e-16
CP001678_1668 1/1 789 856 .. 1 87 [] 57.6 4.3e-16
CP001678_2695 1/1 669 733 .. 1 87 [] 57.0 6.5e-16
CP001678_1062 1/1 185 256 .. 1 87 [] 56.3 9.8e-16
CP001678_1647 1/1 498 569 .. 1 87 [] 44.2 2.7e-12
CP001678_0313 1/1 232 292 .. 1 87 [] 43.6 3.9e-12
CP001678_2992 1/1 230 293 .. 1 87 [] 39.2 6.8e-11
CP001678_1649 1/1 126 181 .. 1 78 [. 37.1 2.7e-10
CP001678_2910 1/1 736 802 .. 1 87 [] 35.8 6.3e-10
CP001678_1269 1/1 248 307 .. 8 87 .] 33.0 3.9e-09
CP001678_0878 1/1 289 353 .. 1 87 [] 30.2 2.5e-08

Alignments of top-scoring domains:
CP001678_3067: domain 1 of 1, from 23 to 88: score 91.8, E = 8.9e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHE+RTPL++I+g+++lL+e tels q
CP001678_3 23 TSQRFTASVSHEIRTPLNGILGMVSLLKE---------TELSLVQ-- 58

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+e i +++ rll+L+n++Ld+sr+eag
CP001678_3 59 ----------KEYVEAIGKSGSRLLDLLNNVLDYSRLEAG 88

CP001678_0213: domain 1 of 1, from 278 to 343: score 91.4, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++++ +ae+L + ++ls +
CP001678_0 278 AKSDFLATMSHEIRTPMNGLLVMAEMLSA---------ANLSMRH-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y e+i r++++ll +ind+Ldls+ie+g
CP001678_0 314 ----------RRYAEIISRSGKSLLTIINDILDLSKIESG 343

CP001678_2620: domain 1 of 1, from 316 to 381: score 89.6, E = 3.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHE+RTP+++++g+ael+l +++++++
CP001678_2 316 IKSDFLATMSHEIRTPMNGVLGMAELILS----------AKPSKKI- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y etil+++++l+r+i+d+Ld+s+ieag
CP001678_2 352 ----------ESYAETILSSGNSLQRIIDDILDFSKIEAG 381

CP001678_0338: domain 1 of 1, from 188 to 255: score 86.4, E = 2.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +flan+sHELRTPLt++ g++e+++ +++++ ++
CP001678_0 188 ARADFLANASHELRTPLTSLAGFIETMRG---------PAKDDREA- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +le+++ +aer++rLindlL lsrie
CP001678_0 225 ---------WDHFLEIMEGQAERMRRLINDLLSLSRIELS 255

CP001678_1275: domain 1 of 1, from 515 to 584: score 85.9, E = 4.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI g++e+L +e + ++l++e
CP001678_1 515 AKSVFLANMSHELRTPLNAINGFSEMLIKEIY------GPLGDER-- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y y e il+++++ll++ind+Ld+++ieag
CP001678_1 554 ---------YIGYAEDILSSGQHLLDMINDILDMAKIEAG 584

CP001678_2349: domain 1 of 1, from 487 to 552: score 75.4, E = 3.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHE RTP+++++g++++L+ t+l+ eq
CP001678_2 487 VKSRFLANMSHEVRTPMSGVLGLTSALEQ---------TPLTKEQ-- 522

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ i +++ ++ ++++d+Ld+++i+
CP001678_2 523 ----------NELVVLIAQSGAYMVNILDDILDFAQIDRD 552

CP001678_0194: domain 1 of 1, from 575 to 643: score 74.9, E = 5.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+ n+s +LR PLt+I+gyae L+ ++ + l+++q
CP001678_0 575 LKTEFVQNVSYQLRSPLTTILGYAEFLES------GKQGSLNAQQ-- 613

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++il+++++l+rLi+++Ldl+ ieag
CP001678_0 614 ----------LENVNSILQASDHLSRLIENILDLATIEAG 643

CP001678_1224: domain 1 of 1, from 235 to 303: score 70.3, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a sHELR L+aI+g++e+++e+++ +els++
CP001678_1 235 QRTLFFAKTSHELRSSLNAILGFSEVMKEGVF------GELSDKY-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey + i++ +++l+ ++d+Ldls+i+ag
CP001678_1 274 ----------KEYAQMIHEGGKSLQMTVDDILDLSKIDAG 303

CP001678_1134: domain 1 of 1, from 229 to 294: score 66.0, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fla++sHELRTP++a++g +e+L + + + +
CP001678_1 229 ERRNFLAMASHELRTPMNALMGSLEILDN---------SSDPKLK-- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + e ++++a+ l+ +++dlLdls +e+g
CP001678_1 265 ----------KGIRELVRDAAKGLSTQLDDLLDLSNLENG 294

CP001678_0188: domain 1 of 1, from 306 to 371: score 59.6, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a+++HEL++PLt+Ir ++e+ ++ e
CP001678_0 306 LNERFAADVAHELKNPLTSIRSAVETSEA---------VEDENVR-- 341

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i r++ rl+rLi d+ sr+ea+
CP001678_0 342 ----------ERMRQVISRDVVRLDRLITDISNASRLEAE 371

CP001678_1668: domain 1 of 1, from 789 to 856: score 57.6, E = 4.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L+ +l + +++
CP001678_1 789 SKTRFLAAASHDLLQPLNAARLFTGALQSNL-------QGTNPDA-- 826

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i++++++ ++L++ lLd+s++++g
CP001678_1 827 ----------LRLVGKIDQAIQSSDQLLRGLLDISKLDHG 856

CP001678_2695: domain 1 of 1, from 669 to 733: score 57.0, E = 6.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl ++sHE+R PL++I gy++lL++ + + +
CP001678_2 669 AKSRFLVSVSHEIRSPLNSIYGYSQLLER-----------GGVKSA- 703

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i+r++e+l +L++ l+++s+ie g
CP001678_2 704 ----------KSAGSYIRRSSEHLTDLVDGLMEISQIEGG 733

CP001678_1062: domain 1 of 1, from 185 to 256: score 56.3, E = 9.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+ +sHE+RTP+++I+g++++L +++ ++ e++
CP001678_1 185 AKSSFLSLISHEIRTPIAGIMGATDMLIAKV-------NNRAYEDNE 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +e+l+t+ ++a ll+L+n+ Ld ++iea
CP001678_1 225 AE--------KELLNTVWSSASDLLQLLNETLDAAKIEAD 256

CP001678_1647: domain 1 of 1, from 498 to 569: score 44.2, E = 2.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+R+PLt I++ ae +++++ ++ + + ++
CP001678_1 498 AWKDVARRIAHEIRNPLTPIQLSAERIQRRF----GKQITIDKDT-- 538

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++tilr++ + r+++++ ++r+ +
CP001678_1 539 ---------FDSCTDTILRQVGDIGRMVEEFSSFARMPKP 569

CP001678_0313: domain 1 of 1, from 232 to 292: score 43.6, E = 3.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++la++sH++RTPLt +++ + lL++ +
CP001678_0 232 QRTQMLAAVSHDIRTPLTRLKLELALLKN---------IK------- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++ ++ ++++++ L ++r ea
CP001678_0 263 ----------GVDLTAAKADILEMEQMLDGYLAFARGEAD 292

CP001678_2992: domain 1 of 1, from 230 to 293: score 39.2, E = 6.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ + a+ +HEL TPL++I + a+ L++ ++ ++
CP001678_2 230 ALGALSAATAHELGTPLATIHLVAKELQR---------ATDEKSET- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + i ++aer++++++++ sr ++
CP001678_2 267 ----------YEDVALIAEQAERCRNILRQI---SRRGEA 293

CP001678_1649: domain 1 of 1, from 126 to 181: score 37.1, E = 2.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ e ++ l HE ++PL++I g+a+lL + ++++++
CP001678_1 126 AMAEVARILGHEVKNPLAGIVGAAQLLAR---------QARNDQM-- 161

peLRledpeyreyletilreaerllrLindl<-*
+l i++e+ r+ rL++++
CP001678_1 162 -----------SMLTLIKEEGARIGRLVDRF 181

CP001678_2910: domain 1 of 1, from 736 to 802: score 35.8, E = 6.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f +sH+L+ PL +r+++elL + +++ ++
CP001678_2 736 NLEQFNTVVSHDLKAPLRHMRMLSELLSL---------SVQPDSEA- 772

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey i++ a + +++++ l lsr
CP001678_2 773 ----------AEYAALIQENAVHGQAMVDSLNALSRVSRS 802

CP001678_1269: domain 1 of 1, from 248 to 307: score 33.0, E = 3.9e-09
*->nlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRled
+++H+LR PL+ +r ++e l+ ++ + ++
CP001678_1 248 AIAHDLRSPLARLRNHLESSLA---------QTGDRQD--------- 276

peyreyletilreaerllrLindlLdlsrieag<-*
++ +le ++e++r l+ n +L ls+ + g
CP001678_1 277 --FEGALEYSIEEVDRVLETFNAILRLSKVQGG 307

CP001678_0878: domain 1 of 1, from 289 to 353: score 30.2, E = 2.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e +a + H+LR+ L++ r++++ L++ ++
CP001678_0 289 ELGEAVAKITHDLRNSLAVARLASDSLRR----------SEDPRV-- 323

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++r++er L + L + + +++
CP001678_0 324 ----------QSVAPRLERAIERAIGLAESTLLYGKSDTP 353


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 9 0|=
-13 40 2|*===
-12 117 71|======*====
-11 292 369|=========================== *
-10 544 685|================================================== *
-9 618 708|========================================================= *
-8 552 530|================================================*==
-7 380 334|==============================*====
-6 241 192|=================*====
-5 139 105|=========*===
-4 71 56|=====*=
-3 46 29|==*==
-2 21 15|=*
-1 9 8|*
0 5 4|*
1 1 2|*
2 3 1|*
3 0 0|
4 1 0|=
5 1 0|=
> 6 28 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 131.0405
P(chi-square) = 1.072e-22

Total sequences searched: 3119

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: