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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Cryptobacterium curtum DSM 15641  

Data for CP001682  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001682.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001682_0216 CDS_271637-270678 83.7 7.2e-24 1
CP001682_0023 CDS_36984-35641 74.0 4.1e-21 1
CP001682_0349 CDS_417325-418623 67.2 3.5e-19 1
CP001682_1118 CDS_1327985-1326495 58.7 9e-17 1
CP001682_0397 CDS_485418-483868 51.7 8.9e-15 1
CP001682_1008 CDS_1200275-1198740 43.8 1.5e-12 1
CP001682_0993 CDS_1180051-1181493 36.9 1.3e-10 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001682_0216 1/1 96 162 .. 1 87 [] 83.7 7.2e-24
CP001682_0023 1/1 217 284 .. 1 87 [] 74.0 4.1e-21
CP001682_0349 1/1 208 275 .. 1 87 [] 67.2 3.5e-19
CP001682_1118 1/1 251 315 .. 1 87 [] 58.7 9e-17
CP001682_0397 1/1 256 325 .. 1 87 [] 51.7 8.9e-15
CP001682_1008 1/1 285 352 .. 1 87 [] 43.8 1.5e-12
CP001682_0993 2/2 229 290 .. 1 81 [. 36.9 1.3e-10

Alignments of top-scoring domains:
CP001682_0216: domain 1 of 1, from 96 to 162: score 83.7, E = 7.2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ +++HELRTPLtaI g+aelL + ++l++e r
CP001682_0 96 QQLQFVGDVAHELRTPLTAIHGNAELLAD---------PDLPPEMR- 132

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +t+ e+erl rL+ndlL l ie
CP001682_0 133 ----------EKFGHTVVTESERLTRLVNDLLSLQHIEGD 162

CP001682_0023: domain 1 of 1, from 217 to 284: score 74.0, E = 4.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ ++sHELRTP+++Irgy++lL + +++ ++ +
CP001682_0 217 QQMRFVNDASHELRTPIAVIRGYTDLLDR--------WGKTDATVL- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ ++ e+e++ +L+++lL l+r ++g
CP001682_0 255 ----------DESISALKAESEHMHDLVEQLLFLARGDTG 284

CP001682_0349: domain 1 of 1, from 208 to 275: score 67.2, E = 3.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHEL+TPLt+I+++ +l++ + ++ + +
CP001682_0 208 RQQQFIADASHELKTPLTVIMANNSLIEGN--------PHDTVASQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++ ++ea r++ Lind+L l+++e
CP001682_0 246 ----------RKWLHSTDEEAARMQVLINDMLYLAKMEDD 275

CP001682_1118: domain 1 of 1, from 251 to 315: score 58.7, E = 9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++HELRTPL aI+ ++e++ ++++ e+++
CP001682_1 251 LERRLTTDVAHELRTPLMAIQSTVEAMVDGVF-------EADAVR-- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
let+ +e++rl+rL++ +L lsr+e+
CP001682_1 289 -------------LETVNSEVRRLSRLVDAILKLSRLENR 315

CP001682_0397: domain 1 of 1, from 256 to 325: score 51.7, E = 8.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e +a+l+H+L+TPLt++rg+a++L e++ ++l+ +q
CP001682_0 256 RTREQVAALAHDLKTPLTVVRGNADMLIEDAT-----AGALDIDQ-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+ +a ++++ ++++ + s +ag
CP001682_0 296 ----------AQSAQAIQTAALSMDSFVSQIVEASHSGAG 325

CP001682_1008: domain 1 of 1, from 285 to 352: score 43.8, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sef+ n+sHELRTPL++I+++ el+le + + +
CP001682_1 285 KQSEFVQNASHELRTPLSVIKTTQELMLE-----------HPNDRIV 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e + ++e++rl rL +dlL l+ ++ag
CP001682_1 321 DR--------FEEITATIDESDRLARLAEDLLALTALDAG 352

CP001682_0993: domain 2 of 2, from 229 to 290: score 36.9, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ ++sH+LR PLt+++gy+++L+++ + s e+r
CP001682_0 229 RSYELVTAMSHDLRSPLTSLIGYLDILEMN--------DQVSQEDR- 266

peLRledpeyreyletilreaerllrLindlLdl<-*
+yl+ +r a r+ + ++l d+
CP001682_0 267 ----------TRYLSNSRRKAYRIKEVSDQLFDY 290


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 10 0|==
-13 16 1|*===
-12 58 31|======*=====
-11 129 160|========================== *
-10 237 298|================================================ *
-9 241 308|================================================= *
-8 242 230|=============================================*===
-7 160 145|============================*===
-6 102 83|================*====
-5 74 45|========*======
-4 40 24|====*===
-3 10 12|==*
-2 10 6|=*
-1 7 3|*=
0 7 1|*=
1 4 0|=
2 1 0|=
> 3 9 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 92.1537
P(chi-square) = 2.001e-15

Total sequences searched: 1357

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: