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Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Cryptobacterium curtum DSM 15641  

Data for CP001682  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001682.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001682_0127 CDS_163813-165078 86.0 1.6e-25 1
CP001682_1024 CDS_1214083-1212728 50.8 3.8e-15 2
CP001682_0638 CDS_776419-775205 46.4 7.4e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001682_0127 1/1 192 260 .. 1 70 [] 86.0 1.6e-25
CP001682_0638 1/1 191 256 .. 1 70 [] 46.4 7.4e-14
CP001682_1024 1/2 183 210 .. 1 28 [. 36.9 4.5e-11

Alignments of top-scoring domains:
CP001682_0127: domain 1 of 1, from 192 to 260: score 86.0, E = 1.6e-25
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIARE+HD ++sLsa+++q+ +a+rl+ d+dp++ar a++e+
CP001682_0 192 ERVRIAREIHDITAHSLSAVSIQAAAAERLI--DRDPAAARGAIAEV 236

relarealaevRrllgdLR.paal<-*
r++a+ al+e+R ++g+LR+++++
CP001682_0 237 RKTAKSALEEIRSMIGVLRnESQE 260

CP001682_0638: domain 1 of 1, from 191 to 256: score 46.4, E = 7.4e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RI+RELHD+++Q L ++++ + a+ + +++ ++ l+e+
CP001682_0 191 ERRRISRELHDGLAQELLSVSMLIRQAEL----KQNNPSTDTLLTEA 233

relarealaevRrllgdLRpaal<-*
+ ++r ++++ l +LRp al
CP001682_0 234 QSTLRCLMDDIHKLSVELRPLAL 256

CP001682_1024: domain 1 of 2, from 183 to 210: score 36.9, E = 4.5e-11
*->ERaRIARELHDsvgQsLsaiklqlelar<-*
ERaRIAR++HD vg+ L+ ++ q+ ++r
CP001682_1 183 ERARIARDIHDNVGHLLTRLIFQVKALR 210


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 2 0|=
-13 28 0|======
-12 35 15|==*====
-11 70 124|============== *
-10 212 288|=========================================== *
-9 247 327|================================================== *
-8 212 252|=========================================== *
-7 174 158|===============================*===
-6 140 89|=================*==========
-5 99 48|=========*==========
-4 49 25|====*=====
-3 34 12|==*====
-2 22 6|=*===
-1 17 3|*===
0 7 1|*=
1 3 0|=
2 0 0|
3 2 0|=
4 0 0|
> 5 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 272.0828
P(chi-square) = 0

Total sequences searched: 1357

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: