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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Saccharomonospora viridis DSM 43017  

Data for CP001683  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001683.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001683_2315 CDS_2603805-2602717 72.3 3.7e-20 1
CP001683_0256 CDS_266447-267697 69.3 2.6e-19 1
CP001683_2974 CDS_3357933-3356200 67.5 8e-19 1
CP001683_3009 CDS_3396173-3394677 65.1 4e-18 1
CP001683_3152 CDS_3557637-3556288 53.7 6.7e-15 1
CP001683_0576 CDS_610478-611761 33.0 4.9e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001683_2315 1/1 140 207 .. 1 87 [] 72.3 3.7e-20
CP001683_0256 1/1 146 212 .. 1 87 [] 69.3 2.6e-19
CP001683_2974 1/1 297 364 .. 1 87 [] 67.5 8e-19
CP001683_3009 1/1 271 335 .. 1 87 [] 65.1 4e-18
CP001683_3152 1/1 218 290 .. 1 87 [] 53.7 6.7e-15
CP001683_0576 1/1 202 266 .. 1 87 [] 33.0 4.9e-09

Alignments of top-scoring domains:
CP001683_2315: domain 1 of 1, from 140 to 207: score 72.3, E = 3.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPL++Ir+ +e+ l d++++ e++
CP001683_2 140 AQRHFVANASHELRTPLAVIRTELEVTLS--------DEDADVEEL- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++++++er +rL+n lL l+r +
CP001683_2 178 ----------RRMAGVVQDATERAERLVNSLLLLARTDGT 207

CP001683_0256: domain 1 of 1, from 146 to 212: score 69.3, E = 2.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI +ae+ l+ ++ +++++
CP001683_0 146 TRRDFVANVSHELKTPVGAIAVLAEAVLD---------AADDPDEV- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e+ilre+ rl +L+ +l lsr++
CP001683_0 183 ----------RRFGEKILRESTRLGKLVTELIALSRLQGA 212

CP001683_2974: domain 1 of 1, from 297 to 364: score 67.5, E = 8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a++L + +++e ++
CP001683_2 297 LQRRFTSDVSHELRTPLTTVRMAADVLYA-------SRDEFPPGL-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e + +e++r + L++dlL++sr++ag
CP001683_2 335 ----------SRSSELLVNELDRFETLLRDLLEISRLDAG 364

CP001683_3009: domain 1 of 1, from 271 to 335: score 65.1, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++ HELRTP+t +rg++e+L +++e++
CP001683_3 271 EQRRFVDDAGHELRTPITIVRGHLEVLDP-----------ADPEDV- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e +++e+ r++r+++dlL l+r e++
CP001683_3 306 ----------ANTVELVDDELGRMNRMVSDLLLLARSEQP 335

CP001683_3152: domain 1 of 1, from 218 to 290: score 53.7, E = 6.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
++++++a++ HELRTPLt++r+++elLl+ + g ++lse +r
CP001683_3 218 RQRRLVADAGHELRTPLTSLRTNLELLLA----AsKEGAPTLSERDR 260

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+ +++ +Li+dl +lsr ++
CP001683_3 261 -----------ADIEADIRAQLDEVTQLIDDLSELSREDTA 290

CP001683_0576: domain 1 of 1, from 202 to 266: score 33.0, E = 4.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ ++sH+LR Lta+++ +e L + + ++e
CP001683_0 202 RERQLVGDVSHQLRSRLTALQLQLEPLTA----------HPDPEV-- 236

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + ++++a+rl + +++lL +r+ ++
CP001683_0 237 ----------TESARAVQEQADRLTEVLDELLAAARAASE 266


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 13 0|=
-13 25 2|*=
-12 146 87|======*=====
-11 350 453|=========================== *
-10 625 841|================================================= *
-9 760 869|==========================================================*
-8 660 650|=================================================*=
-7 515 410|===============================*========
-6 305 236|==================*=====
-5 186 129|=========*=====
-4 118 69|=====*====
-3 58 36|==*==
-2 22 19|=*
-1 14 10|*=
0 14 5|*=
1 6 2|*
2 2 1|*
3 1 0|=
4 0 0|
5 1 0|=
> 6 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 267.4716
P(chi-square) = 0

Total sequences searched: 3828

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: