Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP001683  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001683.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001683_2952 CDS_3333686-3332148 116.7 4.8e-33 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001683_2952 1/1 298 380 .. 1 94 [] 116.7 4.8e-33

Alignments of top-scoring domains:
CP001683_2952: domain 1 of 1, from 298 to 380: score 116.7, E = 4.8e-33
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ+r++++ e+ + aL Es++RV S
CP001683_2 298 EIHHRVKNNLQTVAALLRLQSRRTQSTEA-----KQALTESVRRVSS 339

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L++s d ++vd+++ ++k++ + ++ +++ ++ +
CP001683_2 340 IAMVHEALSMSVD-ERVDLDSLFDKVLPMVGEVATAEAQ---VR--V 380


Histogram of all scores:
score obs exp (one = represents 20 sequences)
----- --- ---
-15 7 0|=
-14 18 0|=
-13 55 23|=*=
-12 229 251|============*
-11 1155 700|==================================*=======================
-10 826 905|========================================== *
-9 584 765|============================== *
-8 440 513|====================== *
-7 214 304|=========== *
-6 157 169|========*
-5 51 91|=== *
-4 37 48|==*
-3 28 25|=*
-2 9 13|*
-1 9 6|*
0 6 3|*
> 1 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 449.1381
P(chi-square) = 0

Total sequences searched: 3828

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: