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106 projects found  

1 accessions found for Saccharomonospora viridis DSM 43017  

Data for CP001683  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001683.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001683_2575 CDS_2892793-2891468 94.6 1.2e-27 1
CP001683_0209 CDS_223353-222235 91.0 1.5e-26 1
CP001683_1533 CDS_1633883-1632780 80.6 1.7e-23 1
CP001683_3693 CDS_4161304-4159646 79.5 3.6e-23 1
CP001683_3767 CDS_4242311-4244116 76.6 2.5e-22 1
CP001683_0018 CDS_20461-19286 71.0 1.2e-20 1
CP001683_3172 CDS_3580245-3581888 68.0 8.6e-20 1
CP001683_1114 CDS_1185695-1184601 62.2 4.6e-18 1
CP001683_0103 CDS_112152-113309 55.0 5.9e-16 1
CP001683_2238 CDS_2508676-2506769 52.2 4.2e-15 1
CP001683_2200 CDS_2459627-2457996 48.0 6.8e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001683_2575 1/1 225 293 .. 1 70 [] 94.6 1.2e-27
CP001683_0209 1/1 185 252 .. 1 70 [] 91.0 1.5e-26
CP001683_1533 1/1 173 238 .. 1 70 [] 80.6 1.7e-23
CP001683_3693 1/1 334 404 .. 1 70 [] 79.5 3.6e-23
CP001683_3767 1/1 384 452 .. 1 70 [] 76.6 2.5e-22
CP001683_0018 1/1 185 254 .. 1 70 [] 71.0 1.2e-20
CP001683_3172 1/1 310 381 .. 1 70 [] 68.0 8.6e-20
CP001683_1114 1/1 174 241 .. 1 70 [] 62.2 4.6e-18
CP001683_0103 1/1 181 250 .. 1 70 [] 55.0 5.9e-16
CP001683_2238 1/1 353 418 .. 1 70 [] 52.2 4.2e-15
CP001683_2200 1/1 350 415 .. 1 70 [] 48.0 6.8e-14

Alignments of top-scoring domains:
CP001683_2575: domain 1 of 1, from 225 to 293: score 94.6, E = 1.2e-27
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIAR+LHD+v+++ s++ +q+++arr+l d+dpe ar+ald++
CP001683_2 225 ERVRIARDLHDVVAHHVSVMGIQAGAARRVL--DTDPELARTALDTV 269

relarealaevRrllgdLR.paal<-*
+++ar+a++e+R llg+LR +++
CP001683_2 270 ERTARTAIDELRGLLGVLRaEPGS 293

CP001683_0209: domain 1 of 1, from 185 to 252: score 91.0, E = 1.5e-26
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD +g+sL++++++++l++ l+ + dp++area++ +
CP001683_0 185 ERERIARELHDLLGHSLTSMIMHAQLCQNLV--EVDPARAREAAAKA 229

relarealaevRrllgdLRpaal<-*
+++ar al+evR+++++LR a l
CP001683_0 230 ERTARAALTEVRAAVSGLRQASL 252

CP001683_1533: domain 1 of 1, from 173 to 238: score 80.6, E = 1.7e-23
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERaR+ARE+HD+v++ +++i++q++++ ++ d+dp ea++++d+i
CP001683_1 173 ERARLAREMHDVVSHDITLIAMQAGVL-CAA--DTDP-EAKKTADTI 215

relarealaevRrllgdLRpaal<-*
r+l+r++l+e+R l+g+LR + +
CP001683_1 216 RTLSRRTLEELRGLVGVLRSGSD 238

CP001683_3693: domain 1 of 1, from 334 to 404: score 79.5, E = 3.6e-23
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ER+ +AR+LHDsv Q+L+++ +q+ ++r++l+ + d++ +++r ++
CP001683_3 334 ERRKLARDLHDSVVQHLFSMGMQAKALRAQLE-RPDADlsQLRGGAQ 379

eirelarealaevRrllgdLRpaal<-*
e++el++ ala++R l+ +LRp++l
CP001683_3 380 ELAELSQNALADLRGLVFELRPMEL 404

CP001683_3767: domain 1 of 1, from 384 to 452: score 76.6, E = 2.5e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER +ARELHD+v+++ ++i +q+++ar+l+ + +p+ + eal +i
CP001683_3 384 ERMALARELHDVVAHHVTGIVVQAQAARMLA--EQNPAVVVEALGQI 428

relarealaevRrllgdLR.paal<-*
++++ +a++ +Rrl++ +R++a
CP001683_3 429 EKAGTDAMKAMRRLVQSMRgDAPA 452

CP001683_0018: domain 1 of 1, from 185 to 254: score 71.0, E = 1.2e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrllds.dkdpeearealde
ER+RIARE+HD++++sL a+++ql ++++ l kdp+ a e++++
CP001683_0 185 ERTRIAREIHDVLAHSLGALSIQLKVVEAEL-AaGKDPASALERIQR 230

irelarealaevRrllgdLRpaal<-*
+ +la+e+lae+R+++++LR ++
CP001683_0 231 CSKLASEGLAEARNAVSALRRDVP 254

CP001683_3172: domain 1 of 1, from 310 to 381: score 68.0, E = 8.6e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe....earea
ER+R+AR+LHDs+ Q+ ++i++q+ + l+ ++d + + +r+
CP001683_3 310 ERQRLARDLHDSIVQQVFSISMQAKSMQVLA--QRDESvsaqSVRRI 354

ldeirelarealaevRrllgdLRpaal<-*
+dei l+++ l+++R+++++LRpa
CP001683_3 355 ADEISLLSQTVLTDLRAMVHELRPAPS 381

CP001683_1114: domain 1 of 1, from 174 to 241: score 62.2, E = 4.6e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER R A +LHD g++L ai+l+ el +rl+ +d+++a+++++e+
CP001683_1 174 ERLRFAADLHDIQGHHLQAIMLKGELTERLI--GRDDDAAKAQAAEL 218

relarealaevRrllgdLRpaal<-*
elar+al+++Rr+++++R ++l
CP001683_1 219 TELARTALTDTRRVVHGYRGTTL 241

CP001683_0103: domain 1 of 1, from 181 to 250: score 55.0, E = 5.9e-16
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+RIARELHD++ Q+L a+ +ql+++rr++ + +++ e+l e
CP001683_0 181 ERERIARELHDVIVQRLYAAGMQLDRVRRRM--RWRFAkADSERLGE 225

irelarealaevRrllgdLR.paal<-*
+ + ++ +++e+R ++++LR++ ++
CP001683_0 226 AIDQLDATIQEIRGTVRELRsTEVE 250

CP001683_2238: domain 1 of 1, from 353 to 418: score 52.2, E = 4.2e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R RIA++LHD v Q+L+a+++ l++a+r++ +++ + +e++ +
CP001683_2 353 DRDRIAQDLHDHVIQRLFAASMSLQGALRQT--HDP--RTAERIGDA 395

relarealaevRrllgdLRpaal<-*
++ ++ + +e+R + +L+ +
CP001683_2 396 MRRLDLTVKEIRTSIFELHSVGT 418

CP001683_2200: domain 1 of 1, from 350 to 415: score 48.0, E = 6.8e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIA+ LHD v +L+ai+++l++ +r++ d+ +r +++ +
CP001683_2 350 ERDRIAQGLHDHVIRRLFAIAMHLQGTLRRI--DDR--NVRSRVEHV 392

relarealaevRrllgdLRpaal<-*
+ ++ + +e+R + dL++++
CP001683_2 393 VDQLDATVREIRTSVFDLHTTDT 415


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 2 0|=
-13 32 0|====
-12 51 42|====*=
-11 93 350|========== *
-10 336 814|================================== *
-9 566 924|========================================================= *
-8 528 712|===================================================== *
-7 528 447|============================================*========
-6 475 253|=========================*======================
-5 482 135|=============*===================================
-4 269 70|======*====================
-3 179 36|===*==============
-2 109 18|=*=========
-1 66 9|*======
0 30 4|*==
1 28 2|*==
2 14 1|*=
3 11 0|==
4 4 0|=
5 4 0|=
6 4 0|=
7 2 0|=
8 0 0|
9 0 0|
> 10 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 3629.4202
P(chi-square) = 0

Total sequences searched: 3828

Whole sequence top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 11
Satisfying E cutoff: 11
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: