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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Slackia heliotrinireducens DSM 20476  

Data for CP001684  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001684.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001684_0212 CDS_270303-269281 88.1 8.7e-25 1
CP001684_1088 CDS_1289896-1288226 75.5 3.2e-21 1
CP001684_1262 CDS_1505361-1504051 71.4 4.6e-20 1
CP001684_1746 CDS_2036698-2038074 71.1 5.5e-20 1
CP001684_2236 CDS_2554431-2553286 64.3 4.8e-18 1
CP001684_0556 CDS_670801-672018 61.5 2.9e-17 1
CP001684_0032 CDS_43013-44515 58.6 2e-16 1
CP001684_2324 CDS_2652927-2651689 49.3 8.7e-14 1
CP001684_1321 CDS_1573870-1575630 44.0 2.8e-12 1
CP001684_0557 CDS_673448-672186 33.2 3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001684_0212 1/1 118 184 .. 1 87 [] 88.1 8.7e-25
CP001684_1088 1/1 324 391 .. 1 87 [] 75.5 3.2e-21
CP001684_1262 1/1 214 281 .. 1 87 [] 71.4 4.6e-20
CP001684_1746 1/1 237 303 .. 1 87 [] 71.1 5.5e-20
CP001684_2236 1/1 157 224 .. 1 87 [] 64.3 4.8e-18
CP001684_0556 1/1 185 252 .. 1 87 [] 61.5 2.9e-17
CP001684_0032 1/1 242 306 .. 1 87 [] 58.6 2e-16
CP001684_2324 1/1 193 255 .. 1 87 [] 49.3 8.7e-14
CP001684_1321 1/1 368 433 .. 1 87 [] 44.0 2.8e-12
CP001684_0557 1/1 195 261 .. 1 87 [] 33.2 3e-09

Alignments of top-scoring domains:
CP001684_0212: domain 1 of 1, from 118 to 184: score 88.1, E = 8.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+++++HELRTPLtaIrg+ae+L + ++++ + r
CP001684_0 118 RQTQFISDVAHELRTPLTAIRGNAETLAD---------PDMPQDLR- 154

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ti +eaerl rL ndlL+l ie g
CP001684_0 155 ----------ERFTHTIVSEAERLTRLTNDLLTLQHIEDG 184

CP001684_1088: domain 1 of 1, from 324 to 391: score 75.5, E = 3.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f+ ++sHELRTP t+Ir+y+++L+e +++l++e r
CP001684_1 324 YKSHFFTMMSHELRTPTTVIRAYIDMLEE--------EGDLDDEAR- 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i+ a++l++L++ +L+ +r+eag
CP001684_1 362 ----------RNAVKAIRTNAQSLSKLVDSILESARMEAG 391

CP001684_1262: domain 1 of 1, from 214 to 281: score 71.4, E = 4.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+a++sHEL+TPLt+I+++a++Ll+ +e+s q
CP001684_1 214 AQKQFVADASHELKTPLTVILANASILLK--------HPERSIAQE- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+ + eaer+++L++d+L+l++ e+
CP001684_1 252 ----------SQWIESTQVEAERMQDLVSDMLTLAQVESA 281

CP001684_1746: domain 1 of 1, from 237 to 303: score 71.1, E = 5.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+ n+sHE++ PL +I gyael++ + +++e++
CP001684_1 237 MRKEFTGNVSHEMKSPLQVIGGYAELIES---------GVAGPEDT- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + i++e++ +++Li+d+L ls+++++
CP001684_1 274 ----------KRFASLIRSESHAMRELIDDVLLLSKLDEN 303

CP001684_2236: domain 1 of 1, from 157 to 224: score 64.3, E = 4.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+ +++H+LRTP+ aI+g++++++++l + ++ q
CP001684_2 157 RRSRFMTDVAHDLRTPVMAISGMVHAMRDGL-------VHDTAMQ-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ i + ++ l +L++ + d+++++ g
CP001684_2 195 ----------DEYLQAICDKSDKLGNLVSSVFDYAKLGGG 224

CP001684_0556: domain 1 of 1, from 185 to 252: score 61.5, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e++a+l+H++RTPLt++ gy++l+ e ++l++eqr
CP001684_0 185 RKNELVAYLAHDIRTPLTSVVGYLSLMNE--------APDLPDEQR- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ +l ae l+ L ++ +++r
CP001684_0 223 ----------KRYVSAALAKAELLDTLTAEFFEITRYNLA 252

CP001684_0032: domain 1 of 1, from 242 to 306: score 58.6, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++ +++HELRTPL aI+ ++e++ ++++ e ++e
CP001684_0 242 LQHRLTTDVAHELRTPLMAIQSTVEAIVDGVF-------EPTAER-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ti +e+ rl+rL++ lL lsr+e+
CP001684_0 280 -------------LATISDEVGRLRRLVDALLRLSRLENR 306

CP001684_2324: domain 1 of 1, from 193 to 255: score 49.3, E = 8.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ n+sHEL+TP+++Ir+++e+ ++ s e+
CP001684_2 193 RQQKFMTNASHELKTPISVIRANTEVTEM-----------ISGET-- 226

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +++ lr+++rl+ +++dl++++r +
CP001684_2 227 -----------EWTQSTLRQVDRLDGMVRDLMTIARGAER 255

CP001684_1321: domain 1 of 1, from 368 to 433: score 44.0, E = 2.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f++++sHEL+ P++a + ++ + + ++ + +
CP001684_1 368 EQKRFVSDASHELKSPIAATSIILDSMST---------HPENVDV-- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++e r+++++ d+L+l+r ++g
CP001684_1 404 ----------PKAIADLKNENVRMSSIVGDMLTLTRHDEG 433

CP001684_0557: domain 1 of 1, from 195 to 261: score 33.2, E = 3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a++sH+ RTPL++ ++ a++L ++ +e r
CP001684_0 195 ARREWVAAVSHDVRTPLAVALADADTLAG---------DDVLDESR- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++i + + +L+ dl r+
CP001684_0 232 ----------RARASRIASKIGDVASLVGDLNAANRLSYA 261


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 4 0|=
-13 32 2|*===
-12 123 63|======*======
-11 308 327|=============================== *
-10 539 608|====================================================== *
-9 529 627|===================================================== *
-8 456 470|==============================================*
-7 340 296|=============================*====
-6 195 170|================*===
-5 94 93|=========*
-4 68 50|====*==
-3 28 26|==*
-2 21 13|=*=
-1 6 7|*
0 4 3|*
1 3 1|*
> 2 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 102.0024
P(chi-square) = 7.161e-17

Total sequences searched: 2765

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: