Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
4 projects found  

1 accessions found for   

Data for CP001685  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001685.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001685_1937 CDS_2136259-2137959 70.1 8.6e-20 1
CP001685_2087 CDS_2313874-2312486 67.6 4.3e-19 1
CP001685_1982 CDS_2184977-2186578 64.2 4e-18 1
CP001685_1542 CDS_1696971-1698323 62.6 1.1e-17 1
CP001685_1003 CDS_1133760-1132408 61.8 2e-17 1
CP001685_1301 CDS_1427832-1426468 60.6 4.3e-17 1
CP001685_1388 CDS_1529332-1530633 43.9 2.4e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001685_1937 1/1 337 404 .. 1 87 [] 70.1 8.6e-20
CP001685_2087 1/1 237 303 .. 1 87 [] 67.6 4.3e-19
CP001685_1982 1/1 266 333 .. 1 87 [] 64.2 4e-18
CP001685_1542 1/1 229 295 .. 1 87 [] 62.6 1.1e-17
CP001685_1003 1/1 234 300 .. 1 87 [] 61.8 2e-17
CP001685_1301 1/1 232 298 .. 1 87 [] 60.6 4.3e-17
CP001685_1388 1/1 218 284 .. 1 87 [] 43.9 2.4e-12

Alignments of top-scoring domains:
CP001685_1937: domain 1 of 1, from 337 to 404: score 70.1, E = 8.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+an+sHELRTP+t+Irg e++ + + se+++l
CP001685_1 337 MRQNFIANISHELRTPITVIRGSMEAICD---------GIISEPEQL 374

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey e il+++ +l+rL+ndl dl+++++
CP001685_1 375 ----------KEYNEQILSDSIHLQRLVNDLIDLTKLQNT 404

CP001685_2087: domain 1 of 1, from 237 to 303: score 67.6, E = 4.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ ++a++sH++RTPL+ I+gy++ L++ + +ls+e+
CP001685_2 237 ARANWIAGVSHDIRTPLSMIMGYTSQLKT--------SLNLSDET-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++il+++er+ +Lindl s++e +
CP001685_2 274 ----------DKKLSVILKQSERIKNLINDLNLASKLEYN 303

CP001685_1982: domain 1 of 1, from 266 to 333: score 64.2, E = 4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPL+ I+gyae++++ ++ ++
CP001685_1 266 NQTKFVSDASHELRTPLAIIKGYAEIIRK---------RGTTDIDI- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +++i++e++ +++Li+ lL l++ e
CP001685_1 303 ---------FVESIDSIISETDNMRNLIQKLLFLAKGEIT 333

CP001685_1542: domain 1 of 1, from 229 to 295: score 62.6, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +++sHELRTP+++I++ ++ le +++ ee
CP001685_1 229 REKQFSSDVSHELRTPVSVILTESQYSLE--------YADTLEEA-- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i+r+a+ +++Lin++++ls+ie +
CP001685_1 266 ----------KDSFSVIQRQAKKMSELINQIMELSKIEKQ 295

CP001685_1003: domain 1 of 1, from 234 to 300: score 61.8, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+f++++sHELRTP+t+I++ ae +e s +++
CP001685_1 234 NEVQFTSDVSHELRTPITVILTQAEYGKE---------YINSLKEA- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++e++ +++L+++lL+lsr+e g
CP001685_1 271 ----------QNSFKIIEKEGQKMSKLVSQLLTLSRMERG 300

CP001685_1301: domain 1 of 1, from 232 to 298: score 60.6, E = 4.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f++++sHELRTP++ I+ +e le +l++ +++
CP001685_1 232 REAQFTSDVSHELRTPVAIIISECEYGLE----------NLTSIENA 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++l+e++ +++Li++lL+lsr++ g
CP001685_1 269 ----------KDTISSVLDETKKMSKLISQLLTLSRMDRG 298

CP001685_1388: domain 1 of 1, from 218 to 284: score 43.9, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f++n+sHEL+TPL+ ++gy+++L+ ++ + + +
CP001685_1 218 SQKAFTSNVSHELKTPLAIMKGYLDILKW---------GKDDKDLL- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e + e++ ++r+in l s +e
CP001685_1 255 ----------NEAIENLNLEVKNIERIINTLFLNSNLEKI 284


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-15 1 0|=
-14 6 0|=
-13 42 1|*=====
-12 117 50|======*========
-11 223 263|============================ *
-10 455 488|========================================================= *
-9 439 504|======================================================= *
-8 333 377|========================================== *
-7 239 237|=============================*
-6 150 136|================*==
-5 104 75|=========*===
-4 45 40|====*=
-3 25 21|==*=
-2 15 11|=*
-1 10 5|*=
0 2 3|*
1 1 1|*
2 2 0|=
3 1 0|=
4 1 0|=
> 5 9 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 126.5249
P(chi-square) = 8.775e-22

Total sequences searched: 2220

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: