Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
4 projects found  

1 accessions found for Leptotrichia buccalis C-1013-b  

Data for CP001685  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001685.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001685_0063 CDS_75584-74181 114.4 1.2e-32 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001685_0063 1/1 277 346 .. 1 76 [. 114.4 1.2e-32

Alignments of top-scoring domains:
CP001685_0063: domain 1 of 1, from 277 to 346: score 114.4, E = 1.2e-32
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ+I+SLLr+Qark++d++v ++a+ +s+nR+lS
CP001685_0 277 EIHHRVKNNLQTIASLLRIQARKTEDKAV-----KAAFSDSINRILS 318

mAliHEeLYksedldtvdfseYlekLten<-*
++ +HE L ++ +ld + ++e+++k+++n
CP001685_0 319 ISVTHELLAQN-GLDELKIKEVINKILKN 346


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 7 0|=
-13 18 13|=*
-12 59 145|======= *
-11 408 406|=============================================*
-10 379 525|=========================================== *
-9 476 443|=================================================*===
-8 336 297|================================*=====
-7 206 176|===================*===
-6 177 98|==========*=========
-5 78 53|=====*===
-4 28 28|===*
-3 22 14|=*=
-2 10 7|*=
-1 8 4|*
0 3 2|*
1 2 1|*
2 0 0|
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 184.3907
P(chi-square) = 1.27e-33

Total sequences searched: 2220

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: