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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Kytococcus sedentarius DSM 20547  

Data for CP001686  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001686.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001686_2050 CDS_2241831-2243348 76.4 1.6e-21 1
CP001686_0814 CDS_873423-875039 74.6 5.3e-21 1
CP001686_0345 CDS_354322-355518 71.6 3.9e-20 1
CP001686_0463 CDS_488333-489502 60.7 4.5e-17 1
CP001686_0302 CDS_312275-313630 57.9 2.9e-16 1
CP001686_0793 CDS_855034-856071 30.6 1.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001686_2050 1/1 262 329 .. 1 87 [] 76.4 1.6e-21
CP001686_0814 1/1 285 352 .. 1 87 [] 74.6 5.3e-21
CP001686_0345 1/1 149 215 .. 1 87 [] 71.6 3.9e-20
CP001686_0463 1/1 146 210 .. 1 87 [] 60.7 4.5e-17
CP001686_0302 1/1 249 307 .. 1 87 [] 57.9 2.9e-16
CP001686_0793 1/1 132 197 .. 1 87 [] 30.6 1.5e-08

Alignments of top-scoring domains:
CP001686_2050: domain 1 of 1, from 262 to 329: score 76.4, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTP++aIrgyael + ++ + e++
CP001686_2 262 QMRRFIADASHELRTPMAAIRGYAELYRSGA-------ITGAEDT-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++i++ea r+ L++dl++l+r++ag
CP001686_2 300 ----------AAAMRRIEDEATRMGVLVEDLMTLARLDAG 329

CP001686_0814: domain 1 of 1, from 285 to 352: score 74.6, E = 5.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+Ir+++e+L ++el++
CP001686_0 285 LQQRFVSDVSHELRTPLTTIRMASEVLHS-------DRDELDPVG-- 322

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e ++ e+erl++L+ dlL++sr +ag
CP001686_0 323 ----------SRSVELLHGEVERLDQLLTDLLEISRQDAG 352

CP001686_0345: domain 1 of 1, from 149 to 215: score 71.6, E = 3.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ +I ++ae+ ++ + +e +
CP001686_0 149 VRRDFVANVSHELKTPVGGIALLAEAVQD---------ARDEPEAV- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ea+rl++L++++ ++sr++ag
CP001686_0 186 ----------ERFARRMVVEADRLSHLVQEIVEFSRLQAG 215

CP001686_0463: domain 1 of 1, from 146 to 210: score 60.7, E = 4.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l++l+HELRTP++++ y e+L++++ ++++e++
CP001686_0 146 TRRRMLSDLAHELRTPVSVLTVYHEALQDGV-------SHWDEPT-- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++ rl rL++d+ d sr+e+g
CP001686_0 184 -------------GELMGEQLARLTRLVEDINDVSRAEEG 210

CP001686_0302: domain 1 of 1, from 249 to 307: score 57.9, E = 2.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a+++ ELRTP+t++ ++elL e
CP001686_0 249 AERAFTADVAQELRTPVTGLVSAVELLPE------------------ 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++ rl+rL++dlL+ sr+e+g
CP001686_0 278 ----------GRPATLVRTQVGRLRRLVEDLLEVSRLESG 307

CP001686_0793: domain 1 of 1, from 132 to 197: score 30.6, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H+LRTPL+a+ + + +e ee
CP001686_0 132 SQRRLAGDAAHQLRTPLSALTIRMDEVAM---------AETLEEA-- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e ++ ++erl + ++++L+ + a
CP001686_0 168 ----------HQLAEGAHTQVERLTSVVEEMLESAANAAL 197


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 8 0|=
-13 30 1|*===
-12 126 58|======*=======
-11 260 302|============================= *
-10 417 561|=============================================== *
-9 499 580|======================================================== *
-8 449 434|================================================*=
-7 316 273|==============================*=====
-6 183 157|=================*===
-5 128 86|=========*=====
-4 58 46|=====*=
-3 34 24|==*=
-2 16 12|=*
-1 13 6|*=
0 6 3|*
1 1 1|*
2 1 0|=
> 3 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 177.6142
P(chi-square) = 3.185e-32

Total sequences searched: 2554

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: