Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Kytococcus sedentarius DSM 20547  

Data for CP001686  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001686.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001686_0831 CDS_898017-899459 91.9 3.6e-26 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001686_0831 1/1 279 347 .. 1 75 [. 91.9 3.6e-26

Alignments of top-scoring domains:
CP001686_0831: domain 1 of 1, from 279 to 347: score 91.9, E = 3.6e-26
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
E+HHRVKNNLQ++S+LLrLQar+++d+++ ++aL+ +++R +
CP001686_0 279 EVHHRVKNNLQTVSALLRLQARRVEDQAA-----RAALETAVHRLGA 320

mAliHEeLYksedldtvdfseYlekLte<-*
++ +HE L ++ + + vd++ +++++++
CP001686_0 321 ISVVHETLAQTAE-EVVDVDRVVDRVVG 347


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 10 0|=
-14 19 0|==
-13 48 15|=*==
-12 203 167|============*===
-11 738 467|===================================*=====================
-10 549 604|=========================================== *
-9 361 510|============================ *
-8 300 342|======================== *
-7 116 203|========= *
-6 118 113|========*=
-5 45 61|====*
-4 23 32|==*
-3 9 16|=*
-2 3 8|*
-1 9 4|*
0 0 2|*
1 1 1|*
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 331.1331
P(chi-square) = 0

Total sequences searched: 2554

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: