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1 accessions found for Halorhabdus utahensis DSM 12940  

Data for CP001687  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001687.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001687_1556 CDS_1542918-1545539 68.3 3.7e-19 1
CP001687_1555 CDS_1541624-1542775 68.3 3.8e-19 1
CP001687_0259 CDS_253374-251401 60.8 5.2e-17 1
CP001687_1630 CDS_1631259-1629919 59.5 1.2e-16 2
CP001687_1496 CDS_1488752-1487346 59.1 1.5e-16 1
CP001687_2295 CDS_2357085-2359100 58.7 2e-16 1
CP001687_2852 CDS_2964202-2962490 58.5 2.3e-16 1
CP001687_1504 CDS_1497090-1495465 56.8 6.9e-16 1
CP001687_1850 CDS_1873355-1874395 55.6 1.5e-15 1
CP001687_2243 CDS_2316836-2315697 54.0 4.2e-15 1
CP001687_0881 CDS_856228-859365 53.9 4.6e-15 1
CP001687_1576 CDS_1564863-1566863 53.3 6.8e-15 1
CP001687_0493 CDS_499864-502554 49.6 7.7e-14 1
CP001687_1019 CDS_993429-991630 48.1 2e-13 1
CP001687_2181 CDS_2256803-2258230 46.5 5.6e-13 1
CP001687_0327 CDS_317150-319426 46.0 7.7e-13 1
CP001687_1753 CDS_1779206-1781215 45.9 8.7e-13 1
CP001687_1848 CDS_1871761-1872918 45.9 8.7e-13 1
CP001687_0310 CDS_299623-297881 42.0 1.1e-11 1
CP001687_1731 CDS_1760558-1759563 34.6 1.4e-09 1
CP001687_2328 CDS_2398369-2397206 31.1 1.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001687_1556 1/1 674 735 .. 1 87 [] 68.3 3.7e-19
CP001687_1555 1/1 174 238 .. 1 87 [] 68.3 3.8e-19
CP001687_0259 1/1 459 520 .. 1 87 [] 60.8 5.2e-17
CP001687_1630 1/2 244 305 .. 1 87 [] 59.4 1.3e-16
CP001687_1496 1/1 267 328 .. 1 87 [] 59.1 1.5e-16
CP001687_2295 1/1 260 320 .. 1 87 [] 58.7 2e-16
CP001687_2852 1/1 351 412 .. 1 87 [] 58.5 2.3e-16
CP001687_1504 1/1 344 405 .. 1 87 [] 56.8 6.9e-16
CP001687_1850 1/1 146 207 .. 1 87 [] 55.6 1.5e-15
CP001687_2243 1/1 146 207 .. 1 87 [] 54.0 4.2e-15
CP001687_0881 1/1 845 906 .. 1 87 [] 53.9 4.6e-15
CP001687_1576 1/1 373 434 .. 1 87 [] 53.3 6.8e-15
CP001687_0493 1/1 692 753 .. 1 87 [] 49.6 7.7e-14
CP001687_1019 1/1 378 441 .. 1 87 [] 48.1 2e-13
CP001687_2181 1/1 269 330 .. 1 87 [] 46.5 5.6e-13
CP001687_0327 1/1 557 618 .. 1 87 [] 46.0 7.7e-13
CP001687_1753 1/1 466 526 .. 1 87 [] 45.9 8.7e-13
CP001687_1848 1/1 154 222 .. 1 87 [] 45.9 8.7e-13
CP001687_0310 1/1 356 429 .. 1 87 [] 42.0 1.1e-11
CP001687_1731 1/1 128 189 .. 1 87 [] 34.6 1.4e-09
CP001687_2328 1/1 158 222 .. 1 87 [] 31.1 1.4e-08

Alignments of top-scoring domains:
CP001687_1556: domain 1 of 1, from 674 to 735: score 68.3, E = 3.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++H+LR+PLt+ +g++e++ e + ++++
CP001687_1 674 RLDQFASVVAHDLRNPLTVAMGFLEVAAE----------TGDPDH-- 708

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ + +r++rLi+dlL+l+r e+
CP001687_1 709 -------------FEKVEAAHDRIERLIEDLLTLARGETT 735

CP001687_1555: domain 1 of 1, from 174 to 238: score 68.3, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ l+H+LR+PLt+ rgy+el +e s+++
CP001687_1 174 RLTEFAGVLAHDLRNPLTGARGYTELVEE----------SVSDPE-- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+t+l++++r+++Li d L l+r +a
CP001687_1 209 ----------ASHLQTVLESLDRMEQLITDTLSLAREGAD 238

CP001687_0259: domain 1 of 1, from 459 to 520: score 60.8, E = 5.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef++ l+H+LR+PL++ g ++lL++ e++++q
CP001687_0 459 RVDEFASVLAHDLRNPLNVAVGRLDLLRT----------ECNSDQ-- 493

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + ++++r+++Li+d+L+l++ ++
CP001687_0 494 -------------LDDVADALDRMDALIDDVLTLAQGGQT 520

CP001687_1630: domain 1 of 2, from 244 to 305: score 59.4, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR+PL++ g++el + + +
CP001687_1 244 RLEQFASVVSHDLRNPLHVAAGNLELVDA-------------PGD-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+ +++r++ Li+dlL+l+r +
CP001687_1 276 ----------QQHLERTATALDRIETLIDDLLTLAREGKS 305

CP001687_1496: domain 1 of 1, from 267 to 328: score 59.1, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR+PLt+ g+++lL+ e ++
CP001687_1 267 RLEKFASVISHDLRNPLTVAAGNVDLLRQ----------ESDDSR-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i +++r+++Li d+L+l+r ++
CP001687_1 302 -------------LERIGAALDRMDALIADILELARQGQS 328

CP001687_2295: domain 1 of 1, from 260 to 320: score 58.7, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++++sH+LRTPL +I g++e +++ ++
CP001687_2 260 RFDKFASYVSHDLRTPLQVIVGALERARD---------GD------- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i+r+++r ++i+dl ls+ ++
CP001687_2 291 ----------TDALDRIERATDRVGEIIEDLSSLSKGDQD 320

CP001687_2852: domain 1 of 1, from 351 to 412: score 58.5, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+LR+PL + g +e +++ + +ee+
CP001687_2 351 QLDRFVGVVSHDLRNPLQVAAGRLEHARR----------DGDEEH-- 385

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++r+ +r++rLi+dlL l+r ++
CP001687_2 386 -------------FEAVERAHDRMERLIEDLLALARQDED 412

CP001687_1504: domain 1 of 1, from 344 to 405: score 56.8, E = 6.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+++lsH+LR+PL++ +g +el+++ e ++e+
CP001687_1 344 RLDSFASMLSHDLRNPLNVAQGRLELARD----------EHDSEH-- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l + +++ r++ Li+d+L+l+r +++
CP001687_1 379 -------------LVAANDALTRIETLIEDVLQLARQGQP 405

CP001687_1850: domain 1 of 1, from 146 to 207: score 55.6, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL++ + + +L++e+d
CP001687_1 146 RLEEFTSVVSHDLRNPLNVAHARVNILRDEAD--------------- 177

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ let+ r+++r+++Li+dlL+l++ +
CP001687_1 178 ----------NDHLETASRALDRMEALIEDLLTLAQQGRA 207

CP001687_2243: domain 1 of 1, from 146 to 207: score 54.0, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+ l+H+LR+PL+ I g+++l +e + ++ +
CP001687_2 146 RLKEFTDILAHDLRNPLSIIGGTLQLYEE----------TGDDAH-- 180

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eti++ ++r+ rL++dlL +r +
CP001687_2 181 -------------IETIKETTDRMARLVEDLLRVARQGDV 207

CP001687_0881: domain 1 of 1, from 845 to 906: score 53.9, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL++ + ++l+l+ e+++e+
CP001687_0 845 RLEEFASLVSHDLRNPLNVAEARVQLALD----------ERDSEH-- 879

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++r+ Li+d+L+l+r ++
CP001687_0 880 -------------LDVAAKAIDRMGVLIDDILQLAREGER 906

CP001687_1576: domain 1 of 1, from 373 to 434: score 53.3, E = 6.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +lsH+LR+PL++ rg ++l++e +
CP001687_1 373 QLERFAETLSHDLRNPLSVARGRIDLAQE-------------TGE-- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ let+ +++er+++Li+d L+l+r ++
CP001687_1 405 ----------EAHLETAAEALERIEQLIEDTLTLAREGQA 434

CP001687_0493: domain 1 of 1, from 692 to 753: score 49.6, E = 7.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+LR+PL++ g aelL e +++
CP001687_0 692 RLDEFAEVISHDLRNPLNVAFGRAELLAE-------------DDE-- 723

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++er+++++ + L+l+r +
CP001687_0 724 ----------SPHTGPLLDALERMEDIVGNTLTLARQGDT 753

CP001687_1019: domain 1 of 1, from 378 to 441: score 48.1, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+ +sH+LR+PL++ + + l+ e e+++++
CP001687_1 378 RLAEFAGVISHDLRNPLNVAQSRITLAAE----------ECGDDH-- 412

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + + ++++r++++i+d L l+r ++
CP001687_1 413 -----------EHIAPVVNALDRMESIIEDTLMLARQGET 441

CP001687_2181: domain 1 of 1, from 269 to 330: score 46.5, E = 5.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ ++sH++R+PL++ g +e++++ + +++q
CP001687_2 269 RVRRLATMVSHDIRNPLSVAVGRLEVAQT----------TGDPDQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i r+++r+++L+ d+ + r +++
CP001687_2 304 -------------FDAIGRALDRIDALVADIITVMRQGEP 330

CP001687_0327: domain 1 of 1, from 557 to 618: score 46.0, E = 7.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef + +sH+LR+PL + r+ ++l+ e +++ +
CP001687_0 557 RLAEFGRVVSHDLRNPLEVARTRCQLAIE----------DCDHSH-- 591

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ ++r+ er++ Li+dlL l++ +a
CP001687_0 592 -------------LDAVERAHERMETLIDDLLVLAQNGAT 618

CP001687_1753: domain 1 of 1, from 466 to 526: score 45.9, E = 8.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ lsH+LR+PL + ++ l+++ ++
CP001687_1 466 RLEEFASILSHDLRNPLEVAEIHTTLAQR---------GD------- 496

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++let++++ +r++++i+d+L++ r +
CP001687_1 497 ----------EDALETVQQAHDRIDAMIDDILTYVREDDT 526

CP001687_1848: domain 1 of 1, from 154 to 222: score 45.9, E = 8.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+ +sH+L PL ++ y++lL++e+ + ++e
CP001687_1 154 SLREFAYIASHDLQEPLRMVSSYVDLLEREYG------DQFDDEA-- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey e + + a+r+ r+in lL++sr ++
CP001687_1 193 ----------EEYMEFAVNGAKRMKRMINSLLEYSRVHTQ 222

CP001687_0310: domain 1 of 1, from 356 to 429: score 42.0, E = 1.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ ++++sH+LR+P+ + +g++e +++ +g +e + +r
CP001687_0 356 RLDQVASTISHDLRNPIQVALGNTERIRT-----CLGPSEIESGDRH 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++++t + ++er++++++dlL+++r +
CP001687_0 398 TVL--------DAVDTTQASLERMEDILSDLLTIAREGKT 429

CP001687_1731: domain 1 of 1, from 128 to 189: score 34.6, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +sH+LR+PL + ++++ +++e +
CP001687_1 128 GLDHVASVISHDLRNPLDVAKAHLRAARE-------------TGE-- 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e + ++ er++r+++d+L+l+
CP001687_1 160 ----------ADHFEHVADAHERMERIVEDVLTLASGSDV 189

CP001687_2328: domain 1 of 1, from 158 to 222: score 31.1, E = 1.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ + + l+H++R+ +++I++ ae L+ el++e+
CP001687_2 158 QLDVLNRVLRHDIRNDVHVILAWAENLEG----------ELPAEK-- 192

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e+ilr++++ +L d++ + +g
CP001687_2 193 ----------EQSIEKILRAGNHVVELTTSAHDIAEMIHG 222


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 7 0|=
-13 54 2|*=====
-12 193 68|=======*==============
-11 311 355|=================================== *
-10 477 659|===================================================== *
-9 524 680|==========================================================*
-8 473 509|===================================================== *
-7 363 321|===================================*=====
-6 203 184|====================*==
-5 137 101|===========*====
-4 103 54|=====*======
-3 37 28|===*=
-2 26 15|=*=
-1 21 7|*==
0 15 4|*=
1 6 2|*
2 6 1|*
3 1 0|=
4 1 0|=
5 3 0|=
6 1 0|=
7 2 0|=
8 0 0|
9 3 0|=
10 1 0|=
> 11 30 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 416.6212
P(chi-square) = 0

Total sequences searched: 2998

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: