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2 accessions found for Halomicrobium mukohataei DSM 12286  

Data for CP001688  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001688.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]

Alignments of top-scoring domains:
[no hits above thresholds]

Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 17 0|==
-13 58 0|======
-12 91 35|===*=====
-11 116 290|=========== *
-10 392 674|==================================== *
-9 593 766|====================================================== *
-8 382 590|=================================== *
-7 384 371|=================================*=
-6 367 210|===================*==============
-5 342 112|==========*=====================
-4 152 58|=====*========
-3 108 30|==*=======
-2 75 15|=*=====
-1 38 7|*===
0 22 4|*=
1 12 2|*=
2 5 1|*
3 6 0|=
4 7 0|=
5 3 0|=
6 1 0|=
7 0 0|
> 8 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1699.3319
P(chi-square) = 0

Total sequences searched: 3173

Whole sequence top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 0
Satisfying E cutoff: 0
Total memory: 20K


Acknowledgements:

This research is funded by:

Developed by: