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2 accessions found for Halomicrobium mukohataei DSM 12286  

Data for CP001688  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001688.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001688_2654 CDS_2586878-2585538 61.7 2.9e-17 1
CP001688_1476 CDS_1439259-1440977 59.3 1.5e-16 1
CP001688_2028 CDS_1977628-1976516 59.3 1.5e-16 1
CP001688_1633 CDS_1599434-1597536 57.8 3.7e-16 1
CP001688_2767 CDS_2697879-2696107 56.3 1e-15 1
CP001688_0170 CDS_179801-181336 54.4 3.6e-15 1
CP001688_2870 CDS_2797677-2799752 52.8 1e-14 1
CP001688_0485 CDS_472328-474187 48.2 1.9e-13 1
CP001688_1725 CDS_1682937-1680445 47.5 3.1e-13 1
CP001688_0976 CDS_953972-952992 40.5 3e-11 1
CP001688_2191 CDS_2142938-2144917 35.1 1.1e-09 1
CP001688_2190 CDS_2140933-2142891 31.9 8.5e-09 1
CP001688_1327 CDS_1281605-1283257 27.2 1.8e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001688_2654 1/1 235 298 .. 1 87 [] 61.7 2.9e-17
CP001688_1476 1/1 344 405 .. 1 87 [] 59.3 1.5e-16
CP001688_2028 1/1 169 230 .. 1 87 [] 59.3 1.5e-16
CP001688_1633 1/1 430 491 .. 1 87 [] 57.8 3.7e-16
CP001688_2767 1/1 390 451 .. 1 87 [] 56.3 1e-15
CP001688_0170 1/1 295 356 .. 1 87 [] 54.4 3.6e-15
CP001688_2870 1/1 487 548 .. 1 87 [] 52.8 1e-14
CP001688_0485 1/1 386 457 .. 1 87 [] 48.2 1.9e-13
CP001688_1725 1/1 635 696 .. 1 87 [] 47.5 3.1e-13
CP001688_0976 1/1 117 178 .. 1 87 [] 40.5 3e-11
CP001688_2191 1/1 261 315 .. 1 81 [. 35.1 1.1e-09
CP001688_2190 1/1 261 321 .. 1 87 [] 31.9 8.5e-09
CP001688_1327 1/1 339 407 .. 1 87 [] 27.2 1.8e-07

Alignments of top-scoring domains:
CP001688_2654: domain 1 of 1, from 235 to 298: score 61.7, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH++R+PL++ + +++lL++ + ++
CP001688_2 235 RLEEFASVVSHDMRNPLNVAQSALQLLEK---------DRGDD---- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++ r+++r+++Li+d+L+l+r ++
CP001688_2 269 ----------AELRARLTRSLDRMESLIDDVLTLAREGET 298

CP001688_1476: domain 1 of 1, from 344 to 405: score 59.3, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL ++rg+ e ++e + ++ +
CP001688_1 344 RLEEFASVVSHDLRNPLQVLRGAFEGARE----------TGDPSH-- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +r+++r++ Li+d+L l+r +++
CP001688_1 379 -------------FDRGERALDRMETLIDDVLSLARQGQP 405

CP001688_2028: domain 1 of 1, from 169 to 230: score 59.3, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR+PL++ +g ++l++e ++
CP001688_2 169 RLEQFASVVSHDLRNPLNVAMGRLQLARE-------------TDD-- 200

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i++++er+++Li+d+L+l+r ++
CP001688_2 201 ----------TAHLDHIEQSLERIEALIEDVLTLARDGNR 230

CP001688_1633: domain 1 of 1, from 430 to 491: score 57.8, E = 3.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL++ +g +++++e + ee+
CP001688_1 430 RLEEFASVVSHDLRNPLSVALGRIDVARE----------TGAEEH-- 464

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+r+++r++ Li+d+L +r +
CP001688_1 465 -------------FDAIERSLQRMDTLIEDILSVARDGRT 491

CP001688_2767: domain 1 of 1, from 390 to 451: score 56.3, E = 1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL ++rg+++ + e +
CP001688_2 390 RLEEFASVVSHDLRNPLQVLRGALDGAAE-------------TGD-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +e+ +r+++r++++i d+L l+r +a
CP001688_2 422 ----------RAHFERGHRAIDRMEDMITDILALARQDAV 451

CP001688_0170: domain 1 of 1, from 295 to 356: score 54.4, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR+PL + gy++ L+e e ++e
CP001688_0 295 RLERFASIASHDLRNPLQVADGYVQQLRE----------ESDDER-- 329

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ i +++ r+ +i+d+L l+r + g
CP001688_0 330 -------------LDEISQALGRIGTIIDDVLALARTGDG 356

CP001688_2870: domain 1 of 1, from 487 to 548: score 52.8, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++ +sH+LR+PL++ +g +e ++ ++++++
CP001688_2 487 RLEEFTSIVSHDLRNPLNVALGRVEYVRN----------DRDDDH-- 521

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l t+++++er+ ++i++ L l+r ++
CP001688_2 522 -------------LATAQQALERMASIIEETLALARQGHS 548

CP001688_0485: domain 1 of 1, from 386 to 457: score 48.2, E = 1.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++sH+LR+PL++ gy++++ e++d ++ + +++
CP001688_0 386 QLDQFASTVSHDLRNPLNVATGYLQMATEGVD-----PDDDAAFDVA 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+L yl++++ +++r+ +i+d+ l+ i++
CP001688_0 428 AAL--------TYLDKVEVSLDRMATIIDDI--LALIDNT 457

CP001688_1725: domain 1 of 1, from 635 to 696: score 47.5, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sH+LR PL++++g + + + +
CP001688_1 635 QLEQFASVVSHDLRSPLNVVQGRVNHAIA-------------TGE-- 666

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ + ++a+r+++Li dlL+l+r +
CP001688_1 667 ----------LEHLDDAADAAHRMEALIGDLLTLARQGRR 696

CP001688_0976: domain 1 of 1, from 117 to 178: score 40.5, E = 3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++++sH+L TP+ ++ +el +e + +e +
CP001688_0 117 RLDTLTSSISHDLQTPIQLAITQLELYRE----------TGDESH-- 151

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++ er++rLi+dlL+l+r +
CP001688_0 152 -------------LDRLADAHERMQRLIDDLLTLARQGDT 178

CP001688_2191: domain 1 of 1, from 261 to 315: score 35.1, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ + H+LR PL + gy+el+++ ++
CP001688_2 261 QLERFTGFVTHDLRSPLQVADGYLELAQA---------GD------- 291

peLRledpeyreyletilreaerllrLindlLdl<-*
+ +l++++++ +r+++Li+d+ +l
CP001688_2 292 ----------HAALDRVENANRRMQELISDFETL 315

CP001688_2190: domain 1 of 1, from 261 to 321: score 31.9, E = 8.5e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++++s ELR PL ++ +y++l+ + ++
CP001688_2 261 RLERFTSYVSQELRSPLQVVDAYLDLAWA---------GD------- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++ ++++r+ +L++ l l ++
CP001688_2 292 ----------EVAFDRLAEATDRMAELVDALERLVDGQHV 321

CP001688_1327: domain 1 of 1, from 339 to 407: score 27.2, E = 1.8e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+++HEL + L ++ g ++++ + l + + q+
CP001688_1 339 QLEDFSAGIRHELLNSLQVVGGQVSAAGTAL-------ESGNVGQA- 377

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+t+ r a+ ++ ++ l +l+r +
CP001688_1 378 ----------RETLSTVSRRAREMETVVDGLSTLARHGRT 407


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-15 1 0|=
-14 17 0|==
-13 56 2|*=====
-12 174 72|=======*==========
-11 367 376|=====================================*
-10 536 697|====================================================== *
-9 585 720|==========================================================*
-8 519 539|==================================================== *
-7 355 340|=================================*==
-6 231 195|===================*====
-5 119 107|==========*=
-4 67 57|=====*=
-3 53 30|==*===
-2 21 15|=*=
-1 17 8|*=
0 11 4|*=
1 5 2|*
2 6 1|*
3 2 0|=
4 1 0|=
5 1 0|=
6 2 0|=
7 3 0|=
8 2 0|=
9 0 0|
10 1 0|=
11 0 0|
12 1 0|=
13 0 0|
14 0 0|
15 1 0|=
16 1 0|=
17 1 0|=
18 1 0|=
19 1 0|=
20 1 0|=
21 0 0|
> 22 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 243.4988
P(chi-square) = 0

Total sequences searched: 3173

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: