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2 accessions found for Halomicrobium mukohataei DSM 12286  

Data for CP001689  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001689.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001689_0082 CDS_119145-115243 61.6 1.7e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001689_0082 1/1 1100 1161 .. 1 87 [] 61.6 1.7e-18

Alignments of top-scoring domains:
CP001689_0082: domain 1 of 1, from 1100 to 1161: score 61.6, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++H+LR+PL++ +g++++ + ++++ +
CP001689_0 1100 RLDQFASVVAHDLRNPLSVAIGFTDIVQQ----------TQDPAH-- 1134

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ + er++rLi+dlL+l+r e+
CP001689_0 1135 -------------FEKVETAHERIERLIDDLLTLARGEST 1161


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 4 0|====
-12 12 4|===*========
-11 18 20|================== *
-10 24 38|======================== *
-9 28 39|============================ *
-8 37 29|============================*========
-7 17 18|=================*
-6 14 10|=========*====
-5 6 5|====*=
-4 4 3|==*=
-3 5 1|*====
-2 1 0|=
-1 3 0|===
0 1 0|=
> 1 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 12.3327
P(chi-square) = 0.05494

Total sequences searched: 176

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: