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2 accessions found for Methanocaldococcus fervens AG86  

Data for CP001696  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001696.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001696_0625 CDS_612486-614384 92.2 3.3e-26 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001696_0625 1/1 409 477 .. 1 87 [] 92.2 3.3e-26

Alignments of top-scoring domains:
CP001696_0625: domain 1 of 1, from 409 to 477: score 92.2, E = 3.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse ++ +sHELRTPLt+I+gy+el l++l +el++ q
CP001696_0 409 LKSEIISIVSHELRTPLTSIKGYVELVLDGLM------GELNSNQ-- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ le++ + ++rl rLi+d+Ldls+ie+g
CP001696_0 448 ----------RRCLEIANNNIDRLKRLIDDMLDLSKIESG 477


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-15 2 0|=
-14 13 0|===
-13 30 1|*====
-12 105 35|=====*============
-11 196 183|==============================*==
-10 319 339|====================================================== *
-9 275 351|============================================== *
-8 234 262|======================================= *
-7 148 165|========================= *
-6 94 95|===============*
-5 64 52|========*==
-4 31 27|====*=
-3 9 14|==*
-2 9 7|=*
-1 7 4|*=
0 3 2|*
1 2 1|*
2 2 0|=
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 166.4882
P(chi-square) = 1.479e-30

Total sequences searched: 1546

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: