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1 accessions found for Chitinophaga pinensis DSM 2588  

Data for CP001699  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001699.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001699_5823 CDS_7506917-7507783 53.4 3.2e-15 1
CP001699_2370 CDS_2939504-2937543 51.8 1e-14 1
CP001699_2119 CDS_2617848-2619764 47.2 2.2e-13 1
CP001699_1720 CDS_2087488-2085425 46.7 3.1e-13 1
CP001699_4485 CDS_5689856-5687640 45.7 6.2e-13 1
CP001699_4217 CDS_5339817-5341796 43.7 2.4e-12 1
CP001699_2878 CDS_3587798-3587058 41.4 1.2e-11 1
CP001699_3061 CDS_3820807-3823920 40.9 1.6e-11 1
CP001699_4108 CDS_5187876-5190929 34.7 1.1e-09 1
CP001699_0011 CDS_15506-14721 34.1 1.7e-09 1
CP001699_4231 CDS_5354023-5351159 30.8 1.6e-08 1
CP001699_6712 CDS_8545101-8545937 30.3 2.2e-08 1
CP001699_5395 CDS_6984353-6985156 30.1 2.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001699_5823 1/1 91 154 .. 1 70 [] 53.4 3.2e-15
CP001699_2370 1/1 454 519 .. 1 70 [] 51.8 1e-14
CP001699_2119 1/1 447 510 .. 1 70 [] 47.2 2.2e-13
CP001699_1720 1/1 479 544 .. 1 70 [] 46.7 3.1e-13
CP001699_4485 1/1 543 608 .. 1 70 [] 45.7 6.2e-13
CP001699_4217 1/1 468 531 .. 1 70 [] 43.7 2.4e-12
CP001699_2878 1/1 52 115 .. 1 70 [] 41.4 1.2e-11
CP001699_3061 1/1 843 908 .. 1 70 [] 40.9 1.6e-11
CP001699_4108 1/1 812 879 .. 2 70 .] 34.7 1.1e-09
CP001699_0011 1/1 68 130 .. 3 70 .] 34.1 1.7e-09
CP001699_4231 1/1 766 827 .. 2 70 .] 30.8 1.6e-08
CP001699_6712 1/1 69 130 .. 4 70 .] 30.3 2.2e-08
CP001699_5395 1/1 61 127 .. 1 70 [] 30.1 2.4e-08

Alignments of top-scoring domains:
CP001699_5823: domain 1 of 1, from 91 to 154: score 53.4, E = 3.2e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA ++HD++g +L+ai++ l+ +++ + + ++ + +
CP001699_5 91 ERKRIAADIHDEIGSNLAAIRVNLQSLHYST--V----QDEQKANSL 131

relarealaevRrllgdLRpaal<-*
+l++++ + vRr++++L p+ +
CP001699_5 132 LQLVDQTSQNVRRAAHNLVPPLF 154

CP001699_2370: domain 1 of 1, from 454 to 519: score 51.8, E = 1e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+R+AR+LHD++g Ls+ikl l+++ ++ + + +++
CP001699_2 454 ERTRLARDLHDGLGGLLSGIKLELSTVN-----PSQTDvHRQSLIQN 495

irelarealaevRrllgdLRpaal<-*
+ ++ a++e+Rr+++ + p +l
CP001699_2 496 TLQRLDGAMDELRRIARSMMPEIL 519

CP001699_2119: domain 1 of 1, from 447 to 510: score 47.2, E = 2.2e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+AR+LHD++g +L+a+kl l++ + e +++l+ i
CP001699_2 447 ERHRLARDLHDGLGGMLAAVKLNLSGQ------LSGVETKQTELRKI 487

relarealaevRrllgdLRpaal<-*
+ ++ + +e+Rr+++++ p l
CP001699_2 488 IGQVDSSVTELRRIAHNMMPVNL 510

CP001699_1720: domain 1 of 1, from 479 to 544: score 46.7, E = 3.1e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER RIAR+LHD+ g +L i+ l+++ r++ ++ + e ++e+
CP001699_1 479 ERSRIARDLHDGMGGTLGTIRTRLSAIFRRY--TTT--DVTEDFKEV 521

relarealaevRrllgdLRpaal<-*
+l++ea e+R ++++L p +l
CP001699_1 522 LHLLEEASVELRKTAHNLMPEIL 544

CP001699_4485: domain 1 of 1, from 543 to 608: score 45.7, E = 6.2e-13
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERaR+AR+LHD++g Ls+ k+ l++ + +l d + l+
CP001699_4 543 ERARLARDLHDGLGGLLSGTKIELSGMLPML--GQD--SQKSLLRKT 585

relarealaevRrllgdLRpaal<-*
+ ++ a +e+R ++++L p l
CP001699_4 586 LGRIDSAVSELRLVAHNLTPELL 608

CP001699_4217: domain 1 of 1, from 468 to 531: score 43.7, E = 2.4e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+AR+LHD++g +Lsaikl+l+++ + ++ + + l+++
CP001699_4 468 ERRRMARDLHDGLGCRLSAIKLGLSRI------PVANSPQEFPLQQV 508

relarealaevRrllgdLRpaal<-*
+ ++ +++e+R + +++ p l
CP001699_4 509 IDQLDASIRELRWISRNMMPESL 531

CP001699_2878: domain 1 of 1, from 52 to 115: score 41.4, E = 1.2e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA +LHDs g Ls ikl ++ ++ +++ + + + +
CP001699_2 52 ERKRIAADLHDSMGPLLSTIKLNIHSIEV----TDE--RDHQIIVRS 92

relarealaevRrllgdLRpaal<-*
+ ++e ++ +R++ ++L pa+l
CP001699_2 93 SGYIDEVIKGLRQISHNLLPATL 115

CP001699_3061: domain 1 of 1, from 843 to 908: score 40.9, E = 1.6e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERaRI+ ++HD +g +Ls i+l +e a+r + ++ ++l++i
CP001699_3 843 ERARISSDMHDDLGSGLSTIRLLSEIAKRKI--TDT--SQTKELERI 885

relarealaevRrllgdLRpaal<-*
e+a e + + ++++++ + +
CP001699_3 886 SEAAGELVDKMSEIIWAMNSSND 908

CP001699_4108: domain 1 of 1, from 812 to 879: score 34.7, E = 1.1e-09
*->RaRIARELHDsvgQsLsaiklqlelarrllds.dkdpeearealdei
R+ IA++LHDsvg +Ls+i++ +e+a+ ++ +++ e+++e l +i
CP001699_4 812 RNGIAQDLHDSVGSTLSGISVYSEVAK-IY-NdQQKTEQLKELLNTI 856

relarealaevRrllgdLRpaal<-*
++a+e ++e+ ++++++ p +
CP001699_4 857 GHTANEMISEMSDIVWAINPKND 879

CP001699_0011: domain 1 of 1, from 68 to 130: score 34.1, E = 1.7e-09
*->aRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeire
+ I++ELHD vgQ Ls++k+ql + +++ + + ++ l+e+++
CP001699_0 68 NNISQELHDHVGQLLSLAKVQLNIIGQRA--E----QPDAGLQEVKD 108

larealaevRrllgdLR.paal<-*
++ +a++ +R+++ +L ++ +
CP001699_0 109 TIGQAMSILRDVAKGLStERVQ 130

CP001699_4231: domain 1 of 1, from 766 to 827: score 30.8, E = 1.6e-08
*->RaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeir
R+ IA +LHD +g +L ++k+ ++la+ +++ e e+l +i+
CP001699_4 766 RTGIASDLHDDLGSTLNSVKVLTHLAK-----REP--EQPEHLNQIE 805

elarealaevRrllgdLRpaal<-*
++ +a a +R+l+++L +a++
CP001699_4 806 NAITQAAAGLRDLIWVLDDAQD 827

CP001699_6712: domain 1 of 1, from 69 to 130: score 30.3, E = 2.2e-08
*->RIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdeirel
++++E+HD +gQsL+ ++l l ++ +++ ea e ++e r++
CP001699_6 69 HLSQEIHDNIGQSLTFVALSLLTVP-----VENNSEAHEYIEESRKA 110

arealaevRrllgdLRpaal<-*
+++a++e+R+l + L+++
CP001699_6 111 LQKAITELRDLSRSLHTDRV 130

CP001699_5395: domain 1 of 1, from 61 to 127: score 30.1, E = 2.4e-08
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIA +LHD+vg +Ls++kl l ++ ll ++ ++e + +l+e
CP001699_5 61 ERKRIAEDLHDEVGAQLSVLKLNLNQLQPLL--KTGNGETE-QLKET 104

relarealaevRrllgdLRpaal<-*
++ ++ ++ +R + + L+p+al
CP001699_5 105 KDFTDTIIQHLRFISQSLHPQAL 127


Histogram of all scores:
score obs exp (one = represents 27 sequences)
----- --- ---
-15 4 0|=
-14 58 0|===
-13 198 1|*=======
-12 355 80|==*===========
-11 552 659|===================== *
-10 1402 1529|==================================================== *
-9 1588 1736|==========================================================*
-8 1067 1338|======================================== *
-7 755 841|============================ *
-6 500 476|=================*=
-5 353 255|=========*====
-4 163 133|====*==
-3 89 68|==*=
-2 47 35|=*
-1 20 17|*
0 13 9|*
1 6 4|*
2 4 2|*
3 2 1|*
> 4 16 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1101.0399
P(chi-square) = 0

Total sequences searched: 7192

Whole sequence top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 13
Satisfying E cutoff: 13
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: