Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Catenulispora acidiphila DSM 44928  

Data for CP001700  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001700.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001700_7581 CDS_8949876-8948347 111.0 4.9e-31 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001700_7581 1/1 302 371 .. 1 76 [. 111.0 4.9e-31

Alignments of top-scoring domains:
CP001700_7581: domain 1 of 1, from 302 to 371: score 111.0, E = 4.9e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQar+++d ++aL+E+++RV S
CP001700_7 302 EIHHRVKNNLQTVAALLRLQARRIEDGTG-----RAALEEAVRRVGS 343

mAliHEeLYksedldtvdfseYlekLten<-*
+Al+HE L+++ d ++vdf+e +++++
CP001700_7 344 IALVHETLSQTLD-ERVDFDEIADRVLAM 371


Histogram of all scores:
score obs exp (one = represents 46 sequences)
----- --- ---
-15 14 0|=
-14 52 0|==
-13 167 55|=*==
-12 565 585|============*
-11 2669 1630|===================================*=======================
-10 2007 2109|============================================ *
-9 1338 1781|============================== *
-8 983 1195|====================== *
-7 451 709|========== *
-6 395 395|========*
-5 116 213|=== *
-4 76 112|==*
-3 42 59|=*
-2 19 30|*
-1 7 16|*
0 6 8|*
1 4 4|*
> 2 3 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 1203.3768
P(chi-square) = 0

Total sequences searched: 8914

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: