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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Jonesia denitrificans DSM 20603  

Data for CP001706  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001706.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001706_2011 CDS_2240038-2241600 80.3 1.3e-22 1
CP001706_1790 CDS_1997404-1995728 74.6 5.1e-21 1
CP001706_1767 CDS_1969896-1970978 68.0 3.8e-19 1
CP001706_2043 CDS_2276965-2275784 63.3 8.1e-18 1
CP001706_2298 CDS_2504299-2505708 60.1 6.7e-17 1
CP001706_1834 CDS_2049010-2047649 57.2 4.4e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001706_2011 1/1 275 342 .. 1 87 [] 80.3 1.3e-22
CP001706_1790 1/1 287 354 .. 1 87 [] 74.6 5.1e-21
CP001706_1767 1/1 127 191 .. 1 87 [] 68.0 3.8e-19
CP001706_2043 1/1 149 215 .. 1 87 [] 63.3 8.1e-18
CP001706_2298 1/1 243 307 .. 1 87 [] 60.1 6.7e-17
CP001706_1834 1/1 207 273 .. 1 87 [] 57.2 4.4e-16

Alignments of top-scoring domains:
CP001706_2011: domain 1 of 1, from 275 to 342: score 80.3, E = 1.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPL++Irgy el ++ ++l++ ++l
CP001706_2 275 KMRRFVSDASHELRTPLATIRGYGELYRM---------GALTDTDAL 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i+++a r+ +L++dlL l+r+++g
CP001706_2 313 ----------NDTMRRIEDSATRMGSLVDDLLALARLDEG 342

CP001706_1790: domain 1 of 1, from 287 to 354: score 74.6, E = 5.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++ae+L +++e ++
CP001706_1 287 VQRQFVSDVSHELRTPLTTVRMAAEMLYQ-------SRDEFDPVS-- 324

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e ++ +++r ++L+ dlL++sr +ag
CP001706_1 325 ----------KRSTELLHTQLDRFEDLLADLLEISRFDAG 354

CP001706_1767: domain 1 of 1, from 127 to 191: score 68.0, E = 3.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +an+sHELRTP++a+ + +e L +++ e ++ +
CP001706_1 127 IRRDVIANVSHELRTPVAALHAQLENLVDGV-------VEPTPAT-- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+t+l ++erl+rLi+ lLdlsrieag
CP001706_1 165 -------------LHTALTQTERLSRLISYLLDLSRIEAG 191

CP001706_2043: domain 1 of 1, from 149 to 215: score 63.3, E = 8.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP+ aI ++ae+L++ ++ +++ +
CP001706_2 149 IRRDFTVNVSHELKTPVGAIGLLAETLQD---------AADDPDAV- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++++e+erl +L++++ +lsr++ +
CP001706_2 186 ----------RHFAGRMQQESERLGALVQEIIELSRLQLQ 215

CP001706_2298: domain 1 of 1, from 243 to 307: score 60.1, E = 6.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l ++ HELRTP+t ++g++elL++ + + e
CP001706_2 243 SQRQLLDDVGHELRTPVTIVQGHLELLET----------TDPQEV-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +l+e++r+ Lind+ l++++
CP001706_2 278 ----------HTTRELVLDELDRMTGLINDIVLLAKAQRT 307

CP001706_1834: domain 1 of 1, from 207 to 273: score 57.2, E = 4.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f++++sH+LRTPLta+++ +e +++ ++ +++
CP001706_1 207 AERQFASDASHQLRTPLTALMMRLEEIQM--------LSDDNPDV-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ l+++erl ++dlL sr +g
CP001706_1 244 ----------QEEARISLEQVERLVGTVDDLLARSRRSSG 273


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 7 0|=
-13 43 1|*====
-12 139 57|======*=========
-11 255 297|============================= *
-10 451 552|=================================================== *
-9 480 570|====================================================== *
-8 397 426|============================================= *
-7 321 269|=============================*======
-6 163 154|=================*=
-5 90 84|=========*
-4 60 45|====*==
-3 44 24|==*==
-2 20 12|=*=
-1 16 6|*=
0 10 3|*=
1 2 1|*
2 3 0|=
3 1 0|=
4 2 0|=
5 0 0|
6 0 0|
> 7 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 206.9310
P(chi-square) = 2.706e-38

Total sequences searched: 2511

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: