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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Kangiella koreensis DSM 16069  

Data for CP001707  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001707.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001707_0836 CDS_884870-882018 96.7 2.9e-27 1
CP001707_2080 CDS_2272092-2270806 73.1 1.4e-20 1
CP001707_2276 CDS_2493185-2494255 67.4 5.9e-19 1
CP001707_0076 CDS_77305-78792 62.9 1.1e-17 1
CP001707_1284 CDS_1389198-1387846 59.2 1.3e-16 1
CP001707_0343 CDS_363562-362159 57.6 3.5e-16 1
CP001707_1074 CDS_1145722-1144061 56.7 6.7e-16 1
CP001707_2357 CDS_2569032-2567728 53.3 5.8e-15 1
CP001707_2306 CDS_2521611-2520307 52.9 7.7e-15 1
CP001707_1613 CDS_1758532-1759893 38.8 7.5e-11 1
CP001707_0884 CDS_928470-930482 38.5 9.1e-11 1
CP001707_2095 CDS_2287838-2289079 28.8 5.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001707_0836 1/1 300 365 .. 1 87 [] 96.7 2.9e-27
CP001707_2080 1/1 205 272 .. 1 87 [] 73.1 1.4e-20
CP001707_2276 1/1 126 190 .. 1 87 [] 67.4 5.9e-19
CP001707_0076 1/1 271 335 .. 1 87 [] 62.9 1.1e-17
CP001707_1284 1/1 228 294 .. 1 87 [] 59.2 1.3e-16
CP001707_0343 1/1 245 309 .. 1 87 [] 57.6 3.5e-16
CP001707_1074 1/1 302 368 .. 1 87 [] 56.7 6.7e-16
CP001707_2357 1/1 217 282 .. 1 87 [] 53.3 5.8e-15
CP001707_2306 1/1 229 289 .. 1 87 [] 52.9 7.7e-15
CP001707_1613 1/1 217 282 .. 1 87 [] 38.8 7.5e-11
CP001707_0884 1/1 446 511 .. 1 87 [] 38.5 9.1e-11
CP001707_2095 1/1 213 276 .. 1 87 [] 28.8 5.4e-08

Alignments of top-scoring domains:
CP001707_0836: domain 1 of 1, from 300 to 365: score 96.7, E = 2.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+eflan+sHE+RTP+++++g++elLl+ tel+ +q
CP001707_0 300 IKTEFLANMSHEIRTPMNGVIGFTELLLK---------TELNNKQ-- 335

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+r+a +ll++i+d+Ld+s+ieag
CP001707_0 336 ----------KDFLFDIKRSATSLLSIIDDILDYSKIEAG 365

CP001707_2080: domain 1 of 1, from 205 to 272: score 73.1, E = 1.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt+I gy+e+L + + e +
CP001707_2 205 VRQDFVANVSHELRTPLTVITGYLEMLDP--------ENNPQLESV- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ ++++a + +L++dlL ls+++a
CP001707_2 243 ----------AKPLQMMHQQALNMGHLVDDLLLLSKLDAK 272

CP001707_2276: domain 1 of 1, from 126 to 190: score 67.4, E = 5.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++la l+HE ++PL++I g+a+lL el++eq
CP001707_2 126 TNNKLLAQLAHEVKNPLSGIAGAAQLLAQ----------ELPPEQ-- 160

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ +i++e+erl++L+++lL + +
CP001707_2 161 ----------QEFTAIIQHEIERLSKLVDRLLLGGKKASK 190

CP001707_0076: domain 1 of 1, from 271 to 335: score 62.9, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++sHELRTP++ ++g +e+L +++ ++ +
CP001707_0 271 ARQQWIADISHELRTPVAILQGELEALIDGV-------RPMQPSA-- 308

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+++ e+ rl rLindl +l+ ++g
CP001707_0 309 -------------LESLHAEVGRLTRLINDLYELALSDQG 335

CP001707_1284: domain 1 of 1, from 228 to 294: score 59.2, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPLt +++ +++ l +++ +
CP001707_1 228 RLSHFSADIAHELRTPLTNLITQTQVVLG---------KARTLNE-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l + l+e erl +++nd+L l++ ++g
CP001707_1 264 ---------YRELLYSNLEEQERLAKMVNDMLWLAKSDHG 294

CP001707_0343: domain 1 of 1, from 245 to 309: score 57.6, E = 3.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++l+++sHELR PLt ++ +a+l+++ ++s+
CP001707_0 245 SQKRLLSDVSHELRSPLTRMQIAASLAQK----------TASPAS-- 279

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+ e++rl+++i +lL+++ +e g
CP001707_0 280 ----------QGHIDRIELEVQRLDEMIGELLQMAALERG 309

CP001707_1074: domain 1 of 1, from 302 to 368: score 56.7, E = 6.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+R+PL+aI ++lLle ++ +e++
CP001707_1 302 SLGQLTASIAHEIRNPLSAINQSIQLLLE--------SASENEQD-- 338

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e+i+r+++r++++i+++ s+ +
CP001707_1 339 ----------QQLMEIIERQSKRINEIIDNIQKVSKRKPP 368

CP001707_2357: domain 1 of 1, from 217 to 282: score 53.3, E = 5.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f++++sHELRTPL++++g ++lL++ + l+ q
CP001707_2 217 REKNFTRYASHELRTPLAVLKGSISLLEK---------QQLNGSQ-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++++ ++ +++L++ l lsr +++
CP001707_2 253 ----------QKIVSRMKPMVKEMEDLLEALFLLSRNQEP 282

CP001707_2306: domain 1 of 1, from 229 to 289: score 52.9, E = 7.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt Ir+++e + e ++
CP001707_2 229 DRNLLLAGVSHDLRTPLTRIRLATEFMAE---------AD------- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e i +++e ++++i+++ + r +
CP001707_2 260 ----------DELREGIVSDTEDMDQIIDQFISFVRDGRD 289

CP001707_1613: domain 1 of 1, from 217 to 282: score 38.8, E = 7.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +++HE+R P++ ++++++l + + ++ +
CP001707_1 217 NQRDLMHAVAHEFRGPMARLSFALDLFND---------KTSDARK-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++++++ l++L++++L +sr+ +g
CP001707_1 253 ----------EKLTTDMHDALDELDALVREVLGYSRLKHG 282

CP001707_0884: domain 1 of 1, from 446 to 511: score 38.5, E = 9.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ l HELRTP++ Ir ++ + + + ls+++
CP001707_0 446 YQEKLASRLNHELRTPIAIIRSSLDNINR---------ESLSADE-- 481

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ a r+++ i++l + r+e+
CP001707_0 482 ----------LQLIDNAQSGAVRMSQTISRLSEANRLEQA 511

CP001707_2095: domain 1 of 1, from 213 to 276: score 28.8, E = 5.4e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f++++sHELRTP t++++ ++ L + ++l+ ++
CP001707_2 213 RETDFTRDISHELRTPATVLKMVLSRLNT--------TQPLDKQT-- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++++a+++++ i lL l+r e+
CP001707_2 250 -------------LLQLKQSAQQMEQTIHVLLALAREESM 276


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-14 5 0|=
-13 39 1|*====
-12 140 60|======*=========
-11 269 312|============================== *
-10 459 578|=================================================== *
-9 491 597|======================================================= *
-8 422 447|=============================================== *
-7 311 282|===============================*===
-6 206 162|=================*=====
-5 109 89|=========*===
-4 78 47|=====*===
-3 44 25|==*==
-2 23 13|=*=
-1 8 6|*
0 8 3|*
1 2 1|*
2 3 0|=
3 0 0|
4 0 0|
> 5 15 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 217.2732
P(chi-square) = 3.615e-310

Total sequences searched: 2632

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: