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Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Kangiella koreensis DSM 16069  

Data for CP001707  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP001707.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001707_1336 CDS_1440697-1442451 74.4 7.7e-22 1
CP001707_1199 CDS_1299513-1300256 61.0 6.9e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001707_1336 1/1 378 447 .. 1 70 [] 74.4 7.7e-22
CP001707_1199 1/1 46 109 .. 1 70 [] 61.0 6.9e-18

Alignments of top-scoring domains:
CP001707_1336: domain 1 of 1, from 378 to 447: score 74.4, E = 7.7e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
ERa IARELHDs++QsLs +klq++l+ r+l dk+ e++ ++ ++
CP001707_1 378 ERAVIARELHDSLAQSLSFLKLQTSLLSRQL--DKNLErnTIENTIG 422

eirelarealaevRrllgdLRpaal<-*
+++ ++ a++++R+ll+++R +++
CP001707_1 423 DLKDGLNNAYRQLRELLTTFRLQIE 447

CP001707_1199: domain 1 of 1, from 46 to 109: score 61.0, E = 6.9e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER++IARELHD+vgQ L+a++ ql+ +k+ e+ ++l+e+
CP001707_1 46 ERKHIARELHDGVGQLLTALINQLQQM------HKEGEPDPKELEEA 86

relarealaevRrllgdLRpaal<-*
+lar+al+++R++ + +Rp +l
CP001707_1 87 LTLARQALSDTREISRLMRPRIL 109


Histogram of all scores:
score obs exp (one = represents 10 sequences)
----- --- ---
-14 19 0|==
-13 78 0|========
-12 137 29|==*===========
-11 189 241|=================== *
-10 502 559|=================================================== *
-9 554 635|======================================================== *
-8 359 489|==================================== *
-7 272 307|============================ *
-6 181 174|=================*=
-5 166 93|=========*=======
-4 81 48|====*====
-3 27 25|==*
-2 27 12|=*=
-1 15 6|*=
0 13 3|*=
1 7 1|*
2 2 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 565.2798
P(chi-square) = 0

Total sequences searched: 2632

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: