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Classification of phyla is from NCBI page
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41 projects found  

1 accessions found for Robiginitalea biformata HTCC2501  

Data for CP001712  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001712.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001712_0972 CDS_1073568-1071028 82.9 3e-23 2
CP001712_2328 CDS_2569135-2567405 77.1 1.3e-21 1
CP001712_0071 CDS_85548-82639 74.9 5.4e-21 1
CP001712_0144 CDS_180490-176123 74.3 7.9e-21 1
CP001712_2163 CDS_2379624-2376799 70.8 8.2e-20 1
CP001712_3116 CDS_3429367-3430764 70.4 1e-19 1
CP001712_3038 CDS_3342905-3345109 68.6 3.4e-19 1
CP001712_1020 CDS_1117341-1118408 64.7 4.3e-18 1
CP001712_2515 CDS_2762052-2760508 58.2 3e-16 1
CP001712_3024 CDS_3329786-3328536 54.0 4.6e-15 1
CP001712_1939 CDS_2137646-2141674 52.0 1.7e-14 1
CP001712_1494 CDS_1662038-1660944 41.3 1.8e-11 1
CP001712_0513 CDS_567955-566501 39.2 7.1e-11 1
CP001712_1922 CDS_2118041-2119984 36.7 3.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001712_0972 2/2 320 385 .. 1 87 [] 82.5 3.9e-23
CP001712_2328 1/1 69 134 .. 1 87 [] 77.1 1.3e-21
CP001712_0071 1/1 435 506 .. 1 87 [] 74.9 5.4e-21
CP001712_0144 1/1 986 1068 .. 1 87 [] 74.3 7.9e-21
CP001712_2163 1/1 435 500 .. 1 87 [] 70.8 8.2e-20
CP001712_3116 1/1 235 301 .. 1 87 [] 70.4 1e-19
CP001712_3038 1/1 359 424 .. 1 87 [] 68.6 3.4e-19
CP001712_1020 1/1 122 189 .. 1 87 [] 64.7 4.3e-18
CP001712_2515 1/1 289 357 .. 1 87 [] 58.2 3e-16
CP001712_3024 1/1 189 253 .. 1 87 [] 54.0 4.6e-15
CP001712_1939 1/1 829 895 .. 1 87 [] 52.0 1.7e-14
CP001712_1494 1/1 149 195 .. 1 68 [. 41.3 1.8e-11
CP001712_0513 1/1 268 339 .. 1 87 [] 39.2 7.1e-11
CP001712_1922 1/1 418 486 .. 1 87 [] 36.7 3.7e-10

Alignments of top-scoring domains:
CP001712_0972: domain 2 of 2, from 320 to 385: score 82.5, E = 3.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a++sH+LR PL++I+gy elL telse+q
CP001712_0 320 SRERLIASVSHDLRSPLNTIQGYGELLGQ---------TELSEKQ-- 355

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+ +++++++l+rL ndlLd+sr+eag
CP001712_0 356 ----------AAYTAAMDSASRYLERLANDLLDFSRLEAG 385

CP001712_2328: domain 1 of 1, from 69 to 134: score 77.1, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sHE+RTPL++I+g+++lL e ++l+e +
CP001712_2 69 DSQMLIATVSHEIRTPLSGIIGFTDLLSE---------SPLGERE-- 104

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ i+++a+ ll+++n+l+++s ie+g
CP001712_2 105 ----------AEYVGAIRSAAHGLLEIVNELREFSTIESG 134

CP001712_0071: domain 1 of 1, from 435 to 506: score 74.9, E = 5.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+ n+sHE+RTPLt Irg ++++l+++ e ++e rl
CP001712_0 435 LKSRFFTNISHEFRTPLTLIRGPIQAALDRSG------KEGGSEVRL 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p ++ l+ ++r +erl+ L+++lL+lsrie+g
CP001712_0 476 P---------ARDLDMVRRNTERLEGLVDELLELSRIESG 506

CP001712_0144: domain 1 of 1, from 986 to 1068: score 74.3, E = 7.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldk......v.lagdte
aks fl+++sHELRTPLt+++g+a++++++l + + + + +
CP001712_0 986 AKSAFLSTVSHELRTPLTSVLGFAKIIRKRLTEkifpavTvDDQKIK 1032

lseeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +q+ e l+++ +e+erl Lind+Ldl++ie+g
CP001712_0 1033 RTMKQV-----------SENLDVVVSEGERLTTLINDVLDLAKIESG 1068

CP001712_2163: domain 1 of 1, from 435 to 500: score 70.8, E = 8.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks f+an+sHE+RTPLt I+g +e L+ +
CP001712_2 435 LKSGFFANISHEFRTPLTLIKGPIEKLEQ---------NPGETLS-- 470

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re ++ i+r ++r l L+n+lLdlsri++g
CP001712_2 471 ----------REEVRMIRRNTQRVLGLVNQLLDLSRIDQG 500

CP001712_3116: domain 1 of 1, from 235 to 301: score 70.4, E = 1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+ n+sHELR+PLtaI+g++e+ ++ +++
CP001712_3 235 QQSRFINNASHELRNPLTAILGLTEVGQA---------RQRDAAS-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l+ i+rea+rl++L++ lL+l++ ++
CP001712_3 271 ---------YRELLRDIEREAQRLDHLVDGLLQLAQTGES 301

CP001712_3038: domain 1 of 1, from 359 to 424: score 68.6, E = 3.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl+++sHELRTPL a+ g+++lLle ++ s eq
CP001712_3 359 AKTNFLSTVSHELRTPLYAVTGLTHLLLE---------ENPSKEQ-- 394

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++ ++++ll+ ind+L++ +i+a
CP001712_3 395 ----------QEHLKALKFSGDYLLNFINDILQINKIDAD 424

CP001712_1020: domain 1 of 1, from 122 to 189: score 64.7, E = 4.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ efl n+sHEL+TPL +++gy+++Ll+ ++l++++++
CP001712_1 122 YRKEFLGNVSHELKTPLFTVQGYIHTLLD---------GALDDKKVR 159

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++ + +erl +i dl ++++e g
CP001712_1 160 ----------RKYLNRAAKGVERLIYIIKDLDLITKLEVG 189

CP001712_2515: domain 1 of 1, from 289 to 357: score 58.2, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+f+ n+ HE++TP+++I +++e++++ +++ ++
CP001712_2 289 IKSDFINNMTHEFKTPIATINLAVEAIKN--------PKIMDDREK- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +yl+ i++e +r+ ++++++L +s++e +
CP001712_2 327 ---------VNRYLQMIRDENKRMHAQVENVLRISKLEKN 357

CP001712_3024: domain 1 of 1, from 189 to 253: score 54.0, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ef+ nl HELRTP+ +I+++a++L+e +l+ee+
CP001712_3 189 TTHEFINNLTHELRTPVFSISLAAKILRE----------KLPEEE-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +til+++ r + i+++L+l +e
CP001712_3 224 ----------KPLADTILQQTARVSGHIDQVLELGNLERA 253

CP001712_1939: domain 1 of 1, from 829 to 895: score 52.0, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks++ ++sHE+RTPLt I+g +++ l + ls+ +
CP001712_1 829 FKSKLYTDISHEFRTPLTLISGPVDAKLG--------AGGLSDAD-- 865

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+r ++rl +L++++L l+++e g
CP001712_1 866 ----------HANFSMIKRNTNRLMALVDQMLHLAKLEKG 895

CP001712_1494: domain 1 of 1, from 149 to 195: score 41.3, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e +a+++HEL+TPL+ I+g+ael++e + +++++
CP001712_1 149 ILGEITAGIAHELNTPLANILGFAELIQE---------RATDPKTI- 185

peLRledpeyreyletilrea<-*
e l++i++ a
CP001712_1 186 -----------EDLDRIIENA 195

CP001712_0513: domain 1 of 1, from 268 to 339: score 39.2, E = 7.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++ ++HE+++PLt +r+ ++ ++++d ++d++ + +
CP001712_0 268 AWREMAKQVAHEIKNPLTPMRLSVQSFERKFD---PRDPDVGRQV-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +t++++++ l+++ + + ++++ a+
CP001712_0 310 ----------AEFSKTLIQQIDTLSSIASAFSNFAKMPAQ 339

CP001712_1922: domain 1 of 1, from 418 to 486: score 36.7, E = 3.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++f++ ++H+LR PL +++ ++ lL + ++d ee
CP001712_1 418 SKDRFFSIVAHDLRSPLGSLKSFTTLLAD------HIDLMSLEEI-- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ ++r+++ +L ++l + +r + +
CP001712_1 457 ----------KEMGVQLDRSVDNTMQLTDNLITWARSQMN 486


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-15 1 0|=
-14 26 0|===
-13 59 2|*=====
-12 167 73|======*=========
-11 305 380|============================ *
-10 537 706|================================================= *
-9 630 729|==========================================================*
-8 548 545|=================================================*
-7 381 344|===============================*===
-6 242 198|=================*====
-5 129 108|=========*==
-4 75 58|=====*=
-3 46 30|==*==
-2 23 16|=*=
-1 11 8|*
0 7 4|*
1 3 2|*
2 2 1|*
3 1 0|=
4 1 0|=
5 0 0|
> 6 17 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 222.2444
P(chi-square) = 3.33e-311

Total sequences searched: 3211

Whole sequence top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 14
Satisfying E cutoff: 14
Total memory: 26K


Acknowledgements:

This research is funded by:

Developed by: