Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
25 projects found  

2 accessions found for Chlamydophila pneumoniae LPCoLN  

Data for CP001713  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001713.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001713_0167 CDS_168724-167630 65.5 8.4e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001713_0167 1/1 151 216 .. 1 87 [] 65.5 8.4e-19

Alignments of top-scoring domains:
CP001713_0167: domain 1 of 1, from 151 to 216: score 65.5, E = 8.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+HE+R+PL++I g+a++L++ + s+ +
CP001713_0 151 ELGKMTATLAHEIRNPLSGIVGFASILKK---------EISSPRH-- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i++ +++l++L++ +L++++ +
CP001713_0 187 ----------QRMLSSIISGTRSLNNLVSSMLEYTKSQPL 216


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 3 0|=
-14 18 0|=====
-13 27 0|=======
-12 77 25|======*=============
-11 126 130|================================*
-10 162 241|========================================= *
-9 189 249|================================================ *
-8 162 186|========================================= *
-7 133 117|=============================*====
-6 85 67|================*=====
-5 57 37|=========*=====
-4 17 19|====*
-3 19 10|==*==
-2 7 5|=*
-1 3 2|*
0 8 1|*=
1 1 0|=
2 1 0|=
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 176.2882
P(chi-square) = 1.38e-32

Total sequences searched: 1097

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: