Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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4 accessions found for Candidatus Accumulibacter phosphatis clade IIA str. UW-1  

Data for CP001716  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001716.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001716_0133 CDS_141169-142557 58.9 8.9e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001716_0133 1/1 245 311 .. 1 87 [] 58.9 8.9e-18

Alignments of top-scoring domains:
CP001716_0133: domain 1 of 1, from 245 to 311: score 58.9, E = 8.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f ++++HELRTP++ +++ ++++l ++ ++
CP001716_0 245 RLSDFSSDIAHELRTPVSNLLTQTQVMLL---------RVRTIDE-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ l + +e+er+ ++i d+L l++++++
CP001716_0 281 ---------YQDVLASNAEELERMAKMIADMLFLAKADNN 311


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 4 0|====
-12 12 3|==*=========
-11 21 18|=================*===
-10 22 34|====================== *
-9 26 35|========================== *
-8 19 26|=================== *
-7 17 16|===============*=
-6 10 9|========*=
-5 15 5|====*==========
-4 2 2|=*
-3 4 1|*===
-2 2 0|==
-1 0 0|
> 0 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 27.3259
P(chi-square) = 0.0001258

Total sequences searched: 156

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: