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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Atopobium parvulum DSM 20469  

Data for CP001721  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001721.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001721_1033 CDS_1181195-1182568 75.2 1.9e-21 1
CP001721_1332 CDS_1520790-1519285 70.8 3.3e-20 1
CP001721_1221 CDS_1388671-1387367 66.3 6.5e-19 1
CP001721_1317 CDS_1499605-1500285 65.1 1.4e-18 1
CP001721_0087 CDS_99356-100516 33.3 1.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001721_1033 1/1 228 295 .. 1 87 [] 75.2 1.9e-21
CP001721_1332 1/1 266 330 .. 1 87 [] 70.8 3.3e-20
CP001721_1221 1/1 218 280 .. 1 87 [] 66.3 6.5e-19
CP001721_1317 1/1 1 63 [. 6 87 .] 65.1 1.4e-18
CP001721_0087 1/1 150 216 .. 1 87 [] 33.3 1.4e-09

Alignments of top-scoring domains:
CP001721_1033: domain 1 of 1, from 228 to 295: score 75.2, E = 1.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+ ++sHELRTP+++Irgy+++L + +++ +e +
CP001721_1 228 QQMRFVNDASHELRTPIAVIRGYTDMLDR--------WGKTDEAVL- 265

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++e++++ +L+++lL l+r +ag
CP001721_1 266 ----------DESITALKSESQHMHDLVEQLLFLARGDAG 295

CP001721_1332: domain 1 of 1, from 266 to 330: score 70.8, E = 3.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++++HELRTPL aI++++e++++ + l++++
CP001721_1 266 LERRLTSDVAHELRTPLMAIMATVEAIQD---------GILPADE-- 301

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le i +e++rl+rL++ +L lsr+e+g
CP001721_1 302 -----------ERLENIVSESRRLSRLVDAMLHLSRLENG 330

CP001721_1221: domain 1 of 1, from 218 to 280: score 66.3, E = 6.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fl+++sHEL+TP+++I ++ae+L + els
CP001721_1 218 KQKQFLSDASHELKTPIAVIDANAEILSR----------ELSH---- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ i+ e++r+ +L+ +lLd+s +e+
CP001721_1 251 ----------NEWLSNIQYESNRMGKLVKQLLDFSSAENR 280

CP001721_1317: domain 1 of 1, from 1 to 63: score 65.1, E = 1.4e-18
*->lanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRl
+ ++sHELRTP+++Irgya++L + +++ +e +
CP001721_1 1 MNDASHELRTPIAVIRGYADMLDR--------WGKTDEAVL------ 33

edpeyreyletilreaerllrLindlLdlsrieag<-*
e + +++e+e++ +L+++lL l+r +ag
CP001721_1 34 -----DESIAALKSESEHMHELVEQLLFLARGDAG 63

CP001721_0087: domain 1 of 1, from 150 to 216: score 33.3, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +++HELRTP++++r+ +++ ++ ++ +
CP001721_0 150 MQSRFSVSAAHELRTPIAVLRTKLDVFKK---------KKRKQNE-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e+++t++ ++rl+++i +lL+l+ +
CP001721_0 186 ---------YDELVDTMETYIDRLSAIIANLLELTETSEL 216


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 1 0|=
-14 2 0|=
-13 18 1|*===
-12 61 30|=====*=======
-11 126 160|========================== *
-10 233 297|=============================================== *
-9 276 307|======================================================== *
-8 231 230|=============================================*=
-7 168 144|============================*=====
-6 119 83|================*=======
-5 51 45|========*==
-4 22 24|====*
-3 11 12|==*
-2 10 6|=*
-1 10 3|*=
0 4 1|*
1 2 0|=
> 2 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 75.2818
P(chi-square) = 4.193e-12

Total sequences searched: 1353

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: