Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

4 accessions found for Zymomonas mobilis subsp. mobilis NCIMB 11163  

Data for CP001722  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001722.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001722_0165 CDS_193768-192503 78.1 3.9e-22 1
CP001722_0214 CDS_251014-253401 75.6 2e-21 1
CP001722_0028 CDS_32438-30801 58.5 1.3e-16 1
CP001722_0199 CDS_227667-229973 52.9 5.2e-15 1
CP001722_0153 CDS_175074-176414 47.5 1.8e-13 1
CP001722_0651 CDS_773777-771342 43.5 2.5e-12 1
CP001722_0213 CDS_248453-250717 39.3 3.7e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001722_0165 1/1 190 258 .. 1 87 [] 78.1 3.9e-22
CP001722_0214 1/1 558 626 .. 1 87 [] 75.6 2e-21
CP001722_0028 1/1 308 373 .. 1 87 [] 58.5 1.3e-16
CP001722_0199 1/1 517 588 .. 1 87 [] 52.9 5.2e-15
CP001722_0153 1/1 213 271 .. 1 87 [] 47.5 1.8e-13
CP001722_0651 1/1 436 502 .. 1 87 [] 43.5 2.5e-12
CP001722_0213 1/1 525 592 .. 1 87 [] 39.3 3.7e-11

Alignments of top-scoring domains:
CP001722_0165: domain 1 of 1, from 190 to 258: score 78.1, E = 3.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+an sHELRTPL++++g++e+L++ d+ e +++
CP001722_0 190 VRIDFVANTSHELRTPLATLSGFIETLED--------DDVIKERDTR 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++ rea+r+++L++dl+ lsrieag
CP001722_0 229 ----------HHFLSIMAREAKRMQNLVDDLMSLSRIEAG 258

CP001722_0214: domain 1 of 1, from 558 to 626: score 75.6, E = 2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+an+s ELRTPLt+I+g+ae+L ++ + q++
CP001722_0 558 LKTDFVANMSYELRTPLTSISGFAEMLAQGY--------CGDLSQMA 596

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+ il+++ rl+ Li+d+Ldl+ +e+g
CP001722_0 597 ----------NDYVAAILDAVARLSTLIDDILDLTLLESG 626

CP001722_0028: domain 1 of 1, from 308 to 373: score 58.5, E = 1.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++ HEL++PL+++r +++ L++ +++ r
CP001722_0 308 ATEAFAADVTHELKNPLASLRSAVDSLEM----------IKDDHLR- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +i+++++rl+rLi d+ + sr +a+
CP001722_0 344 ----------QQLIGVIRDDIQRLDRLITDISEASRVDAE 373

CP001722_0199: domain 1 of 1, from 517 to 588: score 52.9, E = 5.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I+++ae L++++ g++ s+e++
CP001722_0 517 AWADVARRIAHEIKNPLTPIQLAAERLQRRY-----GRQITSDEET- 557

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++ti r++ l+r+++++ ++r+ +
CP001722_0 558 ---------FSRLTSTIVRQVGDLRRMVDEFSSFARMPKP 588

CP001722_0153: domain 1 of 1, from 213 to 271: score 47.5, E = 1.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+la++sH+LRTPL+ +++ a+ ++e
CP001722_0 213 ERTEMLAAVSHDLRTPLARLQLRASFIEE------------------ 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ +++ + +i +L++ r ++
CP001722_0 242 ----------DDIREAVEADLQEMATMIKSVLQFLRGDQD 271

CP001722_0651: domain 1 of 1, from 436 to 502: score 43.5, E = 2.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+gy++++++ ++ ++ +
CP001722_0 436 AIGQLAGGVAHDFNNILTAIIGYCDVMRM--------RHVPGDSD-- 472

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i++ ++r +L ++lL +sr ++
CP001722_0 473 ----------YDDIQQIRHNSNRAAALTRQLLAFSRQQTM 502

CP001722_0213: domain 1 of 1, from 525 to 592: score 39.3, E = 3.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l+ l HELR+PL+aI g+ae+++ + l++ +
CP001722_0 525 IDRDSLRQLMHELRNPLNAIVGFAEMIEH---------QMLGPVGK- 561

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr y i r+++rll+ ++d L l+ e++
CP001722_0 562 --------SYRYYAADITRQGQRLLQAVDD-LNLAAEESE 592


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 8 0|==
-13 24 1|*===
-12 66 41|=====*====
-11 153 213|====================== *
-10 268 395|======================================= *
-9 377 408|====================================================== *
-8 315 306|===========================================*=
-7 224 192|===========================*====
-6 155 110|===============*=======
-5 76 60|========*==
-4 55 32|====*===
-3 30 17|==*==
-2 11 9|=*
-1 16 4|*==
0 4 2|*
1 4 1|*
2 1 0|=
3 1 0|=
4 0 0|
5 0 0|
6 2 0|=
7 0 0|
8 2 0|=
9 0 0|
10 0 0|
> 11 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 127.6738
P(chi-square) = 1.392e-22

Total sequences searched: 1800

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: