Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Eggerthella lenta DSM 2243  

Data for CP001726  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001726.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001726_3040 CDS_3598325-3596661 87.2 1.7e-24 1
CP001726_1317 CDS_1610881-1608740 86.0 3.8e-24 1
CP001726_2818 CDS_3329455-3330372 85.8 4.4e-24 1
CP001726_1221 CDS_1497533-1499821 85.5 5.3e-24 1
CP001726_0090 CDS_119870-121852 82.7 3.3e-23 1
CP001726_2520 CDS_2997780-2996374 80.9 1.1e-22 1
CP001726_2940 CDS_3475237-3472511 80.4 1.4e-22 1
CP001726_0987 CDS_1224166-1222448 72.3 2.9e-20 1
CP001726_0368 CDS_481667-480369 70.1 1.2e-19 1
CP001726_2148 CDS_2558554-2560146 69.5 1.8e-19 1
CP001726_3003 CDS_3553833-3552145 66.7 1.1e-18 1
CP001726_0721 CDS_930801-929434 64.2 5.6e-18 1
CP001726_1284 CDS_1572592-1575375 62.8 1.4e-17 1
CP001726_0256 CDS_350189-351745 62.6 1.6e-17 1
CP001726_2256 CDS_2697321-2696392 58.9 1.8e-16 1
CP001726_1603 CDS_1934189-1933035 57.0 6.4e-16 1
CP001726_1146 CDS_1405305-1406804 56.6 8e-16 1
CP001726_2795 CDS_3301704-3298924 54.8 2.6e-15 1
CP001726_1909 CDS_2274557-2275993 52.0 1.6e-14 1
CP001726_0758 CDS_973453-974592 50.3 4.8e-14 1
CP001726_0671 CDS_866340-867221 40.6 2.7e-11 1
CP001726_1510 CDS_1832687-1831683 38.5 1.1e-10 1
CP001726_2958 CDS_3494757-3496370 37.8 1.7e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001726_3040 1/1 176 242 .. 1 87 [] 87.2 1.7e-24
CP001726_1317 1/1 331 397 .. 1 87 [] 86.0 3.8e-24
CP001726_2818 1/1 79 145 .. 1 87 [] 85.8 4.4e-24
CP001726_1221 1/1 364 430 .. 1 87 [] 85.5 5.3e-24
CP001726_0090 1/1 246 312 .. 1 87 [] 82.7 3.3e-23
CP001726_2520 1/1 237 303 .. 1 87 [] 80.9 1.1e-22
CP001726_2940 1/1 483 549 .. 1 87 [] 80.4 1.4e-22
CP001726_0987 1/1 334 400 .. 1 87 [] 72.3 2.9e-20
CP001726_0368 1/1 207 274 .. 1 87 [] 70.1 1.2e-19
CP001726_2148 1/1 306 372 .. 1 87 [] 69.5 1.8e-19
CP001726_3003 1/1 324 391 .. 1 87 [] 66.7 1.1e-18
CP001726_0721 1/1 224 291 .. 1 87 [] 64.2 5.6e-18
CP001726_1284 1/1 551 617 .. 1 87 [] 62.8 1.4e-17
CP001726_0256 1/1 275 339 .. 1 87 [] 62.6 1.6e-17
CP001726_2256 1/1 86 151 .. 1 87 [] 58.9 1.8e-16
CP001726_1603 1/1 151 218 .. 1 87 [] 57.0 6.4e-16
CP001726_1146 1/1 259 319 .. 1 82 [. 56.6 8e-16
CP001726_2795 1/1 679 747 .. 1 87 [] 54.8 2.6e-15
CP001726_1909 1/1 249 315 .. 1 87 [] 52.0 1.6e-14
CP001726_0758 1/1 158 225 .. 1 87 [] 50.3 4.8e-14
CP001726_0671 1/1 91 148 .. 9 87 .] 40.6 2.7e-11
CP001726_1510 1/1 115 180 .. 1 87 [] 38.5 1.1e-10
CP001726_2958 1/1 310 380 .. 1 87 [] 37.8 1.7e-10

Alignments of top-scoring domains:
CP001726_3040: domain 1 of 1, from 176 to 242: score 87.2, E = 1.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sH++RTP++aI g++++++e ++e+se+
CP001726_3 176 AKSQFLANMSHDIRTPINAIVGMTKIARE--------SGEASEKI-- 212

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i ++++ll+Lind+Ld+srie+g
CP001726_3 213 ----------AGCLDAITASSRHLLELINDVLDMSRIESG 242

CP001726_1317: domain 1 of 1, from 331 to 397: score 86.0, E = 3.8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fl +sH++RTPL+aI+g el+l+ + +++++
CP001726_1 331 LKSDFLTKMSHDIRTPLNAIMGSNELALR---------SIDDSKTL- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ let ++++e+ll++ind+Ldlsrie+g
CP001726_1 368 ----------KKHLETSRKSGEYLLSIINDMLDLSRIESG 397

CP001726_2818: domain 1 of 1, from 79 to 145: score 85.8, E = 4.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+++++HELRTPLtaIrg+ae+L++ ++l++e +
CP001726_2 79 RQAAFISDVAHELRTPLTAIRGNAEMLED---------PDLPPELH- 115

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++i+ e+erl+rL dlL+l ri+ +
CP001726_2 116 ----------EKFCSIIIAESERLSRLTHDLLTLQRIDDN 145

CP001726_1221: domain 1 of 1, from 364 to 430: score 85.5, E = 5.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+ +sHE+RTP+++I+g++ ++le + +ee++
CP001726_1 364 AKSEFLSRMSHEIRTPMNGIMGMTAIALE---------NAHDEEKA- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le+i+ +e+l +Lind+Ld+s+ie+g
CP001726_1 401 ----------RACLEKIDVTSEHLMALINDILDMSKIESG 430

CP001726_0090: domain 1 of 1, from 246 to 312: score 82.7, E = 3.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl+n+sH++RTPLtaI+g+++++ e + +e +r
CP001726_0 246 AKSRFLSNVSHDIRTPLTAIMGLVDIAVE----------HIDERDR- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e +++++ ++++ll+L+nd+Ld+s+ie+g
CP001726_0 282 ---------VKECFDKVQLSSHHLLNLVNDVLDMSKIESG 312

CP001726_2520: domain 1 of 1, from 237 to 303: score 80.9, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f +n+sHE++TPL +I+gyael+++ + + +r
CP001726_2 237 MRRDFSSNVSHEMKTPLQVISGYAELMKN---------DMVQPSDR- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i++ea+ +++Lind+L+ls++++
CP001726_2 274 ----------QKFAALIYDEAQTMRSLINDVLTLSKLDES 303

CP001726_2940: domain 1 of 1, from 483 to 549: score 80.4, E = 1.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+ +sHE+RTP+++I+g+++l++ + + e++
CP001726_2 483 AKSEFLSRMSHEIRTPMNVILGTLQLARS---------NPDDREKV- 519

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i +++++ll Lind+Ld+s+ie+g
CP001726_2 520 ----------AETLKKIGDASDHLLGLINDVLDISKIENG 549

CP001726_0987: domain 1 of 1, from 334 to 400: score 72.3, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+a +sHELRTPLt+I+++a +L+ + l++++
CP001726_0 334 YKNEFFAIMSHELRTPLTSILAFARILRG--------VDSLDAKT-- 370

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e i+ a ll+++n++L++s++ea
CP001726_0 371 ----------RSAVEEIEANATLLLNMVNNILTISKAEAH 400

CP001726_0368: domain 1 of 1, from 207 to 274: score 70.1, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sH+L+TPLt+I++++++Lle +e+s +
CP001726_0 207 QQRRFVADASHDLKTPLTVILANTSILLE--------HPERSIASQ- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+ ++ea++++ L+ dlL l++ ++g
CP001726_0 245 ----------SQWIESTQHEAQQMQGLVGDLLLLAQVDEG 274

CP001726_2148: domain 1 of 1, from 306 to 372: score 69.5, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++ ++++sH+L+TPLt+Irgya++ ++ + ++e++
CP001726_2 306 DKQRIVSDISHDLKTPLTVIRGYAQAFED---------GCVPPEKA- 342

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ +++ ++ ++Li+ l +++ ++
CP001726_2 343 ----------GEYLRAMKEKTDEASQLIDSLFLYAKTNHP 372

CP001726_3003: domain 1 of 1, from 324 to 391: score 66.7, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks++l+++ HELRTPLt+I+++a++ +e + ++ ++
CP001726_3 324 FKSDLLSMVNHELRTPLTSIITFAQISRE---------ACDPANEHD 361

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i++ ++ ll++in++Ld++r +ag
CP001726_3 362 ----------RRSWEEIEKNSRILLNMINNMLDIARSDAG 391

CP001726_0721: domain 1 of 1, from 224 to 291: score 64.2, E = 5.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ef+ n+sHELRTPL++I+++ elLl+ +++ +r
CP001726_0 224 AQTEFVQNASHELRTPLAVIQTTGELLLD--------SPNSRIVDR- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ i +e++rl rL+++l++ls +ag
CP001726_0 262 ----------FEDVNAITSETKRLARLVDNLMELSLGDAG 291

CP001726_1284: domain 1 of 1, from 551 to 617: score 62.8, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fl+ +sHE+RTP++aI+g+++++ ++e+++
CP001726_1 551 AKTDFLSRMSHEIRTPMNAIIGLSSVASL--------SGEATPSI-- 587

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le+i +a+ ll+L+nd+Ld+s+ie+
CP001726_1 588 ----------RSSLEKINMSAQFLLSLVNDILDMSKIEND 617

CP001726_0256: domain 1 of 1, from 275 to 339: score 62.6, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++HELRTPL aI+ ++e++ ++++ e++ee
CP001726_0 275 LERRLTTDVAHELRTPLMAIQSTVEAMVDGVF-------EADEER-- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
let+ +e++rl+rL++ +L lsr+e+
CP001726_0 313 -------------LETVNSEVQRLSRLVDAILKLSRLESR 339

CP001726_2256: domain 1 of 1, from 86 to 151: score 58.9, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + ++sH+LRTPLtaI gy+ lL e + +++++
CP001726_2 86 ELKAQVESISHDLRTPLTAIVGYLALLDE---------EGMDADT-- 121

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l t++r a+ l+rLi ++ +ls+++++
CP001726_2 122 ----------RASLATVRRKADALQRLIAQFYELSQARNE 151

CP001726_1603: domain 1 of 1, from 151 to 218: score 57.0, E = 6.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e++ +l+H+++TPLt+I+gy+ lL+e +++l+ e r
CP001726_1 151 RKNELVVYLAHDIKTPLTSIIGYLTLLEE--------SPDLPLEVR- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+ + l+ a rl++L++++ +++r +
CP001726_1 189 ----------ERYTGITLDKAYRLEELLDEFFEITRYNLQ 218

CP001726_1146: domain 1 of 1, from 259 to 319: score 56.6, E = 8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e +a+l+H+L+TPLt++rg+++lLle +els eq
CP001726_1 259 AQREQIAALAHDLKTPLTVVRGNVDLLLE---------GELSGEQ-- 294

peLRledpeyreyletilreaerllrLindlLdls<-*
r + + a+++ ++ l d s
CP001726_1 295 ----------RACAADVAEGARQMGTYVSALIDAS 319

CP001726_2795: domain 1 of 1, from 679 to 747: score 54.8, E = 2.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+LRTPLt+I+g a++Ll +++ls++q+
CP001726_2 679 LRANLLRTISHDLRTPLTSISGDADMLLH-------DRGALSAQQK- 717

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i+++a l L+++lL ++ri++g
CP001726_2 718 ----------EHLYRDIHDDACWLVTLVENLLSITRIDNG 747

CP001726_1909: domain 1 of 1, from 249 to 315: score 52.0, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +++++sH++RTPL+ I+gya++L +e +e++
CP001726_1 249 ARASWIRGISHDIRTPLSMILGYADALVQ---------DEGAAEEA- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++i+ ++ + +L+ dl + s+++
CP001726_1 286 ----------RASARVIRAQGLKIKDLVTDLNTASQLDYD 315

CP001726_0758: domain 1 of 1, from 158 to 225: score 50.3, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ n++HELRTPL+ +++ +el +++ s +q+
CP001726_0 158 AQRQFTGNAAHELRTPLALMQAQIELFAS--------EHPTSQPQT- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +++++er++r+ lL++s + +
CP001726_0 196 ----------AELLGLLQEQTERMSRMTKVLLEMSELHSV 225

CP001726_0671: domain 1 of 1, from 91 to 148: score 40.6, E = 2.7e-11
*->lsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLRledp
lsH++RTPL++ +gy++l ++ ++ ++ +
CP001726_0 91 LSHDIRTPLAGAQGYLQLVED---------EADPAAK---------- 118

eyreyletilreaerllrLindlLdlsrieag<-*
++yl+ + + ++ + L++dl +++ +
CP001726_0 119 --ERYLSAAAHRLDDVRVLLDDLFSFAQVHDP 148

CP001726_1510: domain 1 of 1, from 115 to 180: score 38.5, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ + la++sH++RTPLta+ +++ ++++ t +e +
CP001726_1 115 ALADALADVSHQIRTPLTAMGLLIGTAER---------TSDEAERI- 151

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ ++ + r L+ lL l++++ag
CP001726_1 152 -----------RALHELETLVSRVGWLVTALLKLAKADAG 180

CP001726_2958: domain 1 of 1, from 310 to 380: score 37.8, E = 1.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ a+ +H+LRTPLt ++g +elL + + ++++ +++ +
CP001726_2 310 ERKRLNAAFAHDLRTPLTILKGKIELLDAHV-----QSGNVPADRL- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++erl+r + + l ++e
CP001726_2 351 ----------TASVASLAAQVERLERYVAAMSGLQKLEDR 380


Histogram of all scores:
score obs exp (one = represents 11 sequences)
----- --- ---
-14 10 0|=
-13 19 2|*=
-12 137 70|======*======
-11 281 363|========================== *
-10 499 675|============================================== *
-9 616 697|======================================================== *
-8 523 521|===============================================*
-7 410 328|=============================*========
-6 244 189|=================*=====
-5 132 103|=========*==
-4 92 55|====*====
-3 39 29|==*=
-2 18 15|=*
-1 16 8|*=
0 3 4|*
1 4 2|*
2 2 1|*
3 0 0|
> 4 25 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 216.6429
P(chi-square) = 4.89e-310

Total sequences searched: 3070

Whole sequence top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: