Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

4 accessions found for Aggregatibacter actinomycetemcomitans D11S-1  

Data for CP001733  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001733.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001733_0818 CDS_766930-768789 74.6 4.4e-21 1
CP001733_0642 CDS_590310-591698 58.8 1.4e-16 1
CP001733_1100 CDS_1052377-1053753 53.3 4.9e-15 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001733_0818 1/1 125 190 .. 1 87 [] 74.6 4.4e-21
CP001733_0642 1/1 240 302 .. 1 87 [] 58.8 1.4e-16
CP001733_1100 1/1 240 306 .. 1 87 [] 53.3 4.9e-15

Alignments of top-scoring domains:
CP001733_0818: domain 1 of 1, from 125 to 190: score 74.6, E = 4.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ ++ ++sHELRTPL++I+g++ +Lle ++ se q
CP001733_0 125 DKTTLMTTISHELRTPLNGIIGLSRILLE---------ENPSERQ-- 160

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ti ++a +l ++ +d+ dl++i+a
CP001733_0 161 ----------QNYLKTINSSALSLAHIFSDIIDLEKIDAK 190

CP001733_0642: domain 1 of 1, from 240 to 302: score 58.8, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++sHELRTPLt +++++ lL++ ++ +
CP001733_0 240 NQQSLLSSISHELRTPLTRLQLATALLRR---------RLGDSNE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i+ ea+rl+++++dlL+lsr + +
CP001733_0 276 -------------IQRIDTEAQRLDKMVSDLLQLSRQQLN 302

CP001733_1100: domain 1 of 1, from 240 to 306: score 53.3, E = 4.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e+++ + ++ r
CP001733_1 240 RERRFTSDAAHELRSPLAALRIQTEVAQI---------AGDDANMR- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ + + ++r +Li++lL+lsr+++
CP001733_1 277 ----------EQALDNLTQGIDRATQLIEQLLTLSRLDSL 306


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 3 0|=
-14 25 0|====
-13 72 1|*==========
-12 133 48|======*============
-11 245 252|===================================*
-10 358 469|==================================================== *
-9 375 484|====================================================== *
-8 311 362|============================================= *
-7 252 228|================================*===
-6 146 131|==================*==
-5 91 72|==========*==
-4 54 38|=====*==
-3 26 20|==*=
-2 19 10|=*=
-1 8 5|*=
0 6 2|*
1 1 1|*
2 4 0|=
3 0 0|
> 4 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 228.2405
P(chi-square) = 1.87e-312

Total sequences searched: 2134

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: