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Thermotogae
Classification of phyla is from NCBI page
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35 projects found  

2 accessions found for Desulfohalobium retbaense DSM 5692  

Data for CP001734  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001734.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001734_2349 CDS_2704409-2708359 90.1 2e-25 1
CP001734_0186 CDS_236698-239130 83.6 1.4e-23 1
CP001734_2288 CDS_2619622-2621061 76.4 1.6e-21 1
CP001734_0463 CDS_573064-574854 76.3 1.7e-21 1
CP001734_2371 CDS_2735314-2737035 67.7 4.5e-19 1
CP001734_0184 CDS_233826-235493 63.1 9.2e-18 1
CP001734_0096 CDS_128053-129630 63.0 9.7e-18 2
CP001734_0201 CDS_254739-253513 62.6 1.3e-17 1
CP001734_0955 CDS_1142330-1144735 58.7 1.6e-16 1
CP001734_1207 CDS_1431021-1433609 58.4 2e-16 1
CP001734_0078 CDS_105033-103606 57.8 3e-16 1
CP001734_0229 CDS_287642-289747 57.1 4.7e-16 1
CP001734_1831 CDS_2121568-2120534 56.0 9.4e-16 1
CP001734_0418 CDS_519291-520787 50.9 2.7e-14 1
CP001734_0542 CDS_656921-659116 49.5 6.8e-14 1
CP001734_0767 CDS_924783-921724 47.8 2e-13 1
CP001734_0919 CDS_1103005-1100795 44.7 1.5e-12 1
CP001734_0404 CDS_499819-501834 43.7 3e-12 1
CP001734_0925 CDS_1110149-1112560 39.5 4.4e-11 1
CP001734_1138 CDS_1352416-1354692 39.4 4.9e-11 1
CP001734_0867 CDS_1038765-1036483 29.7 2.7e-08 1
CP001734_1752 CDS_2036413-2037858 28.6 5.5e-08 1
CP001734_0082 CDS_109380-112220 27.9 9e-08 1
CP001734_1292 CDS_1531578-1529287 27.6 1.1e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001734_2349 1/1 706 771 .. 1 87 [] 90.1 2e-25
CP001734_0186 1/1 433 498 .. 1 87 [] 83.6 1.4e-23
CP001734_2288 1/1 104 169 .. 1 87 [] 76.4 1.6e-21
CP001734_0463 1/1 367 434 .. 1 87 [] 76.3 1.7e-21
CP001734_2371 1/1 353 419 .. 1 87 [] 67.7 4.5e-19
CP001734_0184 1/1 335 401 .. 1 87 [] 63.1 9.2e-18
CP001734_0201 1/1 169 244 .. 1 87 [] 62.6 1.3e-17
CP001734_0096 1/2 311 376 .. 1 87 [] 61.3 2.9e-17
CP001734_0955 1/1 584 649 .. 1 87 [] 58.7 1.6e-16
CP001734_1207 1/1 630 696 .. 1 87 [] 58.4 2e-16
CP001734_0078 1/1 263 330 .. 1 87 [] 57.8 3e-16
CP001734_0229 1/1 445 511 .. 1 87 [] 57.1 4.7e-16
CP001734_1831 1/1 90 156 .. 1 87 [] 56.0 9.4e-16
CP001734_0418 1/1 260 326 .. 1 87 [] 50.9 2.7e-14
CP001734_0542 1/1 513 582 .. 1 87 [] 49.5 6.8e-14
CP001734_0767 1/1 647 713 .. 1 87 [] 47.8 2e-13
CP001734_0919 1/1 362 428 .. 1 87 [] 44.7 1.5e-12
CP001734_0404 1/1 431 502 .. 1 87 [] 43.7 3e-12
CP001734_0925 1/1 433 500 .. 1 87 [] 39.5 4.4e-11
CP001734_1138 1/1 377 443 .. 1 87 [] 39.4 4.9e-11
CP001734_0867 1/1 526 597 .. 1 87 [] 29.7 2.7e-08
CP001734_1752 1/1 390 457 .. 1 87 [] 28.6 5.5e-08
CP001734_0082 1/1 576 642 .. 1 87 [] 27.9 9e-08
CP001734_1292 1/1 398 464 .. 1 87 [] 27.6 1.1e-07

Alignments of top-scoring domains:
CP001734_2349: domain 1 of 1, from 706 to 771: score 90.1, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks flan+sHE+RTP++aI+g+++l++ t+ls++q
CP001734_2 706 TKSAFLANMSHEIRTPMNAILGMLHLIKQ---------THLSAKQ-- 741

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y ++++ ++e ll++ind+Ld+s+ie+g
CP001734_2 742 ----------ANYMDKVHTSTEALLNIINDILDFSKIESG 771

CP001734_0186: domain 1 of 1, from 433 to 498: score 83.6, E = 1.4e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fl++lsHE+RTP++a++g+++lL++ tel++ q
CP001734_0 433 AKSDFLSGLSHEIRTPMNALLGASDLLEK---------TELDARQ-- 468

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ +++++ ll+Li +lLd +r+e g
CP001734_0 469 ----------RKYLRMGKSSGKTLLSLITNLLDVARLERG 498

CP001734_2288: domain 1 of 1, from 104 to 169: score 76.4, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHE+RTPL++ +g++ + le ++l++e
CP001734_2 104 EKSAFLAAMSHEIRTPLHVALGMLGIVLE---------EDLPAEV-- 139

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++++++ +l+ i d+Ld+s+ie+g
CP001734_2 140 ----------QRKLRIAHDASSHLQGVIGDILDFSKIESG 169

CP001734_0463: domain 1 of 1, from 367 to 434: score 76.3, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt+I+gyae+Ll+ + + +e
CP001734_0 367 VRRDFVANVSHELRTPLTSIKGYAETLLDMG-------QVETEAV-- 404

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +++ + a+ ++rL++dlL+ls++e++
CP001734_0 405 ----------HAYMQVVVKNANAMSRLLEDLLQLSKLESN 434

CP001734_2371: domain 1 of 1, from 353 to 419: score 67.7, E = 4.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+l+HE+R+PL+a+rg+a+ ++eeq+
CP001734_2 353 TIGRLAAGLAHEIRNPLSALRGFAQYFAG---------KFAPEEQA- 389

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +t+ rea+rl+r + dlL ++r + +
CP001734_2 390 ----------HTYAQTMVREADRLNRVVTDLLYMARPQPP 419

CP001734_0184: domain 1 of 1, from 335 to 401: score 63.1, E = 9.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++a+l+HE+++PL++I++ ++l++ ++ ++eq+
CP001734_0 335 TIGELAAGLAHEMKNPLAGIKAGLQLAEQ---------GDVPPEQL- 371

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++r++ rl+ L++d+L ++r +
CP001734_0 372 ----------HRLHGVVQRDIGRLDVLLRDFLNYARPNPP 401

CP001734_0201: domain 1 of 1, from 169 to 244: score 62.6, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
+ ++a+++HE ++PL++I+g+a+ +l++l +v+ a d+el +
CP001734_0 169 TIGMLAAGVAHEVNNPLAGIQGFAQGILRRLPRVqEAVDEELANDF- 214

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+etil+e +r++++++ lL++sr ++
CP001734_0 215 -----------QEYTETILQECNRCQEIVRTLLTFSRPRES 244

CP001734_0096: domain 1 of 2, from 311 to 376: score 61.3, E = 2.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a ++HE+++PL++I+g a+ L++++ e +l
CP001734_0 311 LLGQMAAQVAHEIKNPLNSIKGSAHYLKANF-----------EGRIL 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l++i++e+erl++++ d+L +s+ + +
CP001734_0 347 ----------HEFLHVIEEESERLSDILTDFLNFSKPGVP 376

CP001734_0955: domain 1 of 1, from 584 to 649: score 58.7, E = 1.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+l+HE+++PL +I+ y+elL++ t ++++
CP001734_0 584 AVGKLAAGLAHEINNPLGVILCYVELLRT---------TVQDDQA-- 619

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ti++ a++ ++ ++dlL ++r
CP001734_0 620 ----------LSDVQTIEKHAKQAQKVVQDLLNFARRKPS 649

CP001734_1207: domain 1 of 1, from 630 to 696: score 58.4, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++ ++++HE+++PL I+ y++lL++ + + ++q+
CP001734_1 630 ALGQVSSGIAHEINNPLGIILCYTDLLKR---------QLKESPQA- 666

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i+++a+ + +++ dlL++s+ ++
CP001734_1 667 ----------VTDVDVIEQQARNCKKIVTDLLQFSKKQES 696

CP001734_0078: domain 1 of 1, from 263 to 330: score 57.8, E = 3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+R+PL Ir +e+L +++ +++
CP001734_0 263 SMGRMVASIAHEIRNPLGIIRSSSEMLYKKA-------LRDNSQN-- 300

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ + +e++rl++ + ++Ld++r ++
CP001734_0 301 ----------ARLLHAVFQESKRLSQTVHEFLDYARPKQP 330

CP001734_0229: domain 1 of 1, from 445 to 511: score 57.1, E = 4.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ +++HE++TPL I+gy++lLle++ e + +
CP001734_0 445 DLGRLAGGIAHEINTPLGIILGYTQLLLEDF--------EEGTQS-- 481

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r leti+++a+ +++L+ dlL +sr
CP001734_0 482 ----------RTDLETIEKQARICRKLVADLLGFSRQSGF 511

CP001734_1831: domain 1 of 1, from 90 to 156: score 56.0, E = 9.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+an+ HEL+ PL++I++ +e++++ +el+ e++
CP001734_1 90 LYDNFIANVTHELKSPLASIQLSIETMRM---------HELPREKQ- 126

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++ +l++++rl++Li+ +L+ +e+
CP001734_1 127 ----------EEFFNMMLKDTDRLNNLISAILQVPALEQK 156

CP001734_0418: domain 1 of 1, from 260 to 326: score 50.9, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++++++H++++ L I+++a+lLle +++l +e+
CP001734_0 260 AIGTLASGIAHDFNNILGPILLNAQLLLE--------RSPLCDEE-- 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ i ++aer ++L++++L l r ++
CP001734_0 297 ----------RDLLQEINDAAERARHLVRQILHLGRRREA 326

CP001734_0542: domain 1 of 1, from 513 to 582: score 49.5, E = 6.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e ++ ++HE+++PLt I++ a+ L++++ gd+ ++
CP001734_0 513 AWREVARRIAHEIKNPLTPIKLSAQRLQRKF-----GDQVQDGVF-- 552

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e i+r++e+l+++++++ ++++ +
CP001734_0 553 ----------TQSTELIIRQVEHLQQMVSEFSAFAKLPEV 582

CP001734_0767: domain 1 of 1, from 647 to 713: score 47.8, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++H++++ Lt+I+ +el+ + + +++ ++
CP001734_0 647 AIGTLAGGIAHDFNNILTSIINSIELASM----------DVDPDSMA 683

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le++l++a+r ++L+ ++L++sr +
CP001734_0 684 ----------GNDLERALKAAQRGSHLVKQILTFSRPSQD 713

CP001734_0919: domain 1 of 1, from 362 to 428: score 44.7, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H++++ L+ I+gy+elL + ++ s +
CP001734_0 362 SIGRLAGGVAHDFNNLLSPILGYSELLMR---------GKISQDR-- 397

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e + i+++++r ++L ++lL + r ++
CP001734_0 398 ---------FYECIGHIYESGKRGRELTRQLLAFGRKQNL 428

CP001734_0404: domain 1 of 1, from 431 to 502: score 43.7, E = 3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+ a+++HEL++PL+aI++ ++ L ++ + tel++e
CP001734_0 431 SLGEMSAGIAHELNQPLNAIKMGSDFLALTVE----RGTELPPER-- 471

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i +++r +i l+ + r e+
CP001734_0 472 ---------WQGVVHEISAQVDRAAGIIATLRAFGRKETL 502

CP001734_0925: domain 1 of 1, from 433 to 500: score 39.5, E = 4.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ L++I+g++e++ +++q+
CP001734_0 433 SLGRLAGGIAHDFNNVLHVISGNLEMMAL----------RSNSQQAV 469

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ R ++ti+++++r ++L++++L +sr +
CP001734_0 470 GLNR---------IQTIQKSIDRASQLVQQMLLFSRKAES 500

CP001734_1138: domain 1 of 1, from 377 to 443: score 39.4, E = 4.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +l+H++++ L+aIrg+++lL + ++ +++qr
CP001734_1 377 SVGILAGGLAHDFNNLLHAIRGNLDLLGH------NKPEAHPDQQR- 416

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ti+++++r +rL+++lL +sr
CP001734_1 417 -------------LATIRSSIRRAERLVQQLLLFSRKADS 443

CP001734_0867: domain 1 of 1, from 526 to 597: score 29.7, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ +++HEL++PL++I++++ ++ dk ++ +e++
CP001734_0 526 TLGEMATGVAHELNQPLSVIKTASTFFVRKIDK----NEPIAPETL- 567

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i+ ++r ++in ++++ +
CP001734_0 568 ----------ASMAREIDGHVDRATKIINHMREFGHKSEH 597

CP001734_1752: domain 1 of 1, from 390 to 457: score 28.6, E = 5.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++sHEL +PLtaI+ a+lL+ +e+ e +
CP001734_1 390 AALAVAGAISHELAQPLTAIINSAQLLES--------ASEAHNERA- 427

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +i+re+er +L l + r
CP001734_1 428 ----------QRHAAIIHRESERVFDLYHKLQNINRYKLK 457

CP001734_0082: domain 1 of 1, from 576 to 642: score 27.9, E = 9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ ++H++++ Lt I+gyae+Ll+++ + + ++
CP001734_0 576 SVGRLAGWAAHDFNNMLTPILGYAEILLAGA--------PEGGKE-- 612

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le i+ +aer ++L ++lL +sr +
CP001734_0 613 ----------AAKLEQIHAAAERARQLARQLLAFSRNQVL 642

CP001734_1292: domain 1 of 1, from 398 to 464: score 27.6, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++ +++H++++ LtaI+ ++ l++ + + + +
CP001734_1 398 SLGVLAGGIAHDFNNILTAILNNITLARV---------GQRLDVAV- 434

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ ++r+++r +L ++lL +s+ + +
CP001734_1 435 ----------ASKLQDAERATQRAKKLTQQLLAFSQGGLP 464


Histogram of all scores:
score obs exp (one = represents 9 sequences)
----- --- ---
-15 1 0|=
-14 8 0|=
-13 34 1|*===
-12 96 56|======*====
-11 224 293|========================= *
-10 419 545|=============================================== *
-9 501 562|======================================================== *
-8 420 421|==============================================*
-7 283 265|=============================*==
-6 207 152|================*======
-5 102 83|=========*==
-4 67 44|====*===
-3 38 23|==*==
-2 26 12|=*=
-1 12 6|*=
0 4 3|*
1 4 1|*
2 1 0|=
3 3 0|=
4 1 0|=
> 5 28 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 143.1318
P(chi-square) = 3.753e-25

Total sequences searched: 2479

Whole sequence top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 24
Satisfying E cutoff: 24
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: