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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Kribbella flavida DSM 17836  

Data for CP001736  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP001736.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001736_3362 CDS_3691219-3689702 80.9 2.3e-22 1
CP001736_4356 CDS_4805575-4801373 79.8 4.8e-22 1
CP001736_1589 CDS_1714826-1716463 70.6 2e-19 1
CP001736_0262 CDS_275559-274141 68.2 9.3e-19 1
CP001736_1347 CDS_1444824-1446116 66.4 3e-18 1
CP001736_4333 CDS_4776096-4774933 64.4 1.2e-17 1
CP001736_1920 CDS_2046276-2044825 63.8 1.7e-17 2
CP001736_3821 CDS_4180920-4182293 63.1 2.5e-17 1
CP001736_6651 CDS_7271926-7269362 62.7 3.4e-17 1
CP001736_1759 CDS_1889174-1890406 57.6 9.4e-16 1
CP001736_6743 CDS_7377161-7378642 52.7 2.3e-14 1
CP001736_0736 CDS_793978-795246 52.5 2.7e-14 1
CP001736_0988 CDS_1075376-1076596 52.3 3e-14 1
CP001736_3441 CDS_3779573-3780907 52.1 3.4e-14 1
CP001736_6897 CDS_7531573-7533429 50.9 7.4e-14 1
CP001736_3550 CDS_3897806-3896580 41.6 3.2e-11 1
CP001736_0532 CDS_559587-560756 40.7 5.8e-11 1
CP001736_0904 CDS_995849-994476 36.9 7e-10 1
CP001736_6108 CDS_6677441-6676164 34.1 4.3e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001736_3362 1/1 281 345 .. 1 87 [] 80.9 2.3e-22
CP001736_4356 1/1 356 423 .. 1 87 [] 79.8 4.8e-22
CP001736_1589 1/1 281 348 .. 1 87 [] 70.6 2e-19
CP001736_0262 1/1 232 295 .. 1 87 [] 68.2 9.3e-19
CP001736_1347 1/1 181 248 .. 1 87 [] 66.4 3e-18
CP001736_4333 1/1 153 217 .. 1 87 [] 64.4 1.2e-17
CP001736_3821 1/1 241 308 .. 1 87 [] 63.1 2.5e-17
CP001736_6651 1/1 619 687 .. 1 87 [] 62.7 3.4e-17
CP001736_1920 1/2 251 318 .. 1 87 [] 62.1 5e-17
CP001736_1759 1/1 203 261 .. 1 87 [] 57.6 9.4e-16
CP001736_6743 1/1 264 334 .. 1 87 [] 52.7 2.3e-14
CP001736_0736 1/1 208 271 .. 1 87 [] 52.5 2.7e-14
CP001736_0988 1/1 149 215 .. 1 87 [] 52.3 3e-14
CP001736_3441 1/1 222 287 .. 1 87 [] 52.1 3.4e-14
CP001736_6897 1/1 398 462 .. 1 87 [] 50.9 7.4e-14
CP001736_3550 1/1 148 212 .. 1 87 [] 41.6 3.2e-11
CP001736_0532 1/1 172 238 .. 1 87 [] 40.7 5.8e-11
CP001736_0904 1/1 240 296 .. 1 87 [] 36.9 7e-10
CP001736_6108 1/1 202 268 .. 1 87 [] 34.1 4.3e-09

Alignments of top-scoring domains:
CP001736_3362: domain 1 of 1, from 281 to 345: score 80.9, E = 2.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+Irg+ael + ++ + +++ ++
CP001736_3 281 RMRRFVADASHELRTPLTSIRGFAELSRQRG-------GSADPATM- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++i++ea+r+ L++dlL l+r++++
CP001736_3 320 --------------RRIEEEAKRMGLLVDDLLLLARLDQQ 345

CP001736_4356: domain 1 of 1, from 356 to 423: score 79.8, E = 4.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ f++n+sHE+RTPLt I g +e L++ + + + r+
CP001736_4 356 AKTAFFSNISHEFRTPLTLIVGPLEELRA---------RPDGVDARA 393

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re le i+r+a rl +L+n lLd+sr+eag
CP001736_4 394 ----------REELELIHRSALRLGKLVNSLLDFSRLEAG 423

CP001736_1589: domain 1 of 1, from 281 to 348: score 70.6, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+lL e + ++
CP001736_1 281 LQRRFVSDVSHELRTPLTTVRMAADLLHE-------------SRDQ- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+dp+ r+ +e +++e++r ++L+ dlL++sr +ag
CP001736_1 314 -----FDPMSRRSVELLQNELNRFEELLADLLEISRFDAG 348

CP001736_0262: domain 1 of 1, from 232 to 295: score 68.2, E = 9.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ef+ n+ HELRTP+t+Irg++el+ + ++++ eq+
CP001736_0 232 AQREFVDNAGHELRTPITVIRGHLELMSD---------DPRDREQT- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
il+e+ r++r+++dlL l++ + +
CP001736_0 269 -------------RALILDELARMNRMVDDLLVLAKSGRP 295

CP001736_1347: domain 1 of 1, from 181 to 248: score 66.4, E = 3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELR+PL++I++++++ l+ +d++ +e+
CP001736_1 181 AQRQLVDDASHELRNPLAVIQANVDAVLA-------HDDTPPEDR-- 218

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ r+++r+ rL++dlL +r ++
CP001736_1 219 ----------AQATAIVARAIQRMTRLVEDLLASARRSSP 248

CP001736_4333: domain 1 of 1, from 153 to 217: score 64.4, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a +sH+LRTPL+++r+++e L++ + ++
CP001736_4 153 SRRELVAFMSHDLRTPLAGLRALSEGLED---------GVIDDVP-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ ++ ++r+ L++dl +lsr+ a
CP001736_4 189 -----------GALRQLRTTVDRMTGLVDDLFELSRLSAA 217

CP001736_3821: domain 1 of 1, from 241 to 308: score 63.1, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++a++sHELR PLt++ g ++lL + +++els+
CP001736_3 241 RDARLAADVSHELRSPLTTLVGSVDLLNA-------RRDELSPRS-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ + +++r +rL++dlL+l+r +ag
CP001736_3 279 ----------QQALDLVTADLDRFRRLLDDLLELARSDAG 308

CP001736_6651: domain 1 of 1, from 619 to 687: score 62.7, E = 3.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l+++ H+LR PL++ ++ + L+ +d ++s+ +r
CP001736_6 619 LRTALLRAVGHDLRSPLASAKASVTSLRS-------SDVDWSPAER- 657

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l t++++++rl+rL+++lLdlsr++ag
CP001736_6 658 ----------DELLATADESLDRLSRLVDNLLDLSRLQAG 687

CP001736_1920: domain 1 of 2, from 251 to 318: score 62.1, E = 5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ fl+++sHELRTPL +I+g +el ++ + l+e +
CP001736_1 251 RMRTFLSDVSHELRTPLFGIKGSTELYRM---------GGLPERT-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e ++i+ ea rl L +dlL l+r+++
CP001736_1 287 --------DVDETMRRIDLEATRLTGLTEDLLLLARLDEA 318

CP001736_1759: domain 1 of 1, from 203 to 261: score 57.6, E = 9.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++H+LRTP+t+++++aelL
CP001736_1 203 AERRFTADVAHDLRTPVTGLLTAAELLPP------------------ 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e +++ a+ l+ L++dlL+++r ++g
CP001736_1 232 ----------SRPSELVRDRAKVLRGLVEDLLEIARFDSG 261

CP001736_6743: domain 1 of 1, from 264 to 334: score 52.7, E = 2.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ ++ HELRTPLt++r++++lL + +++ l +e+r
CP001736_6 264 RQRRLVGDAGHELRTPLTSVRTNLDLLAQ-----ADQRGGLRPEDR- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ + + l Li dl +l+r +
CP001736_6 305 ----------QQLLDDVRAQMDELTTLIGDLTELARDTPQ 334

CP001736_0736: domain 1 of 1, from 208 to 271: score 52.5, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la+ +H+LRTP++a+r++ae++ ++eqr
CP001736_0 208 QQEGLLADTAHDLRTPVAALRALAEAAAQ------------DPEQR- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l + r a r+ ++i+ lL +r+ ag
CP001736_0 242 ----------AELLPRTVRLAGRMGDIIDGLLVRARLAAG 271

CP001736_0988: domain 1 of 1, from 149 to 215: score 52.3, E = 3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ n+sHEL+TP+ a++++a++ e + ++e +
CP001736_0 149 IRRDFTVNVSHELKTPIGALILLADAVSE---------ASDDPEAV- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++ ea rl+rL+ ++ +lsr++
CP001736_0 186 ----------QRFSGRMRIEAARLSRLVKEIIELSRLQGD 215

CP001736_3441: domain 1 of 1, from 222 to 287: score 52.1, E = 3.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a+ +HELR P++++r+ +e++++ + ++ +
CP001736_3 222 RQRRFVADTAHELRSPIASLRTQLETARD---------SRRPVDW-- 257

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +l e+ r+++L ++lL l+r++ag
CP001736_3 258 ----------EQVSADLLAETVRMQALAEQLLLLARADAG 287

CP001736_6897: domain 1 of 1, from 398 to 462: score 50.9, E = 7.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++++++HELRTPL+ I+gy+ + ++++ +l+
CP001736_6 398 QRKAMVSDVAHELRTPLANIKGYLVASEDGV-------VPLD----- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re++ ++l+e+ l+rL+ dl dl+ ++ag
CP001736_6 433 ----------RELVTSLLEETGLLERLVADLQDLALADAG 462

CP001736_3550: domain 1 of 1, from 148 to 212: score 41.6, E = 3.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPL+ ++++e++++ + + ++
CP001736_3 148 EQRRFAANASHELRTPLAITQTLLEVARN----------DPDRDT-- 182

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e+++ r +L + +L lsr+ +
CP001736_3 183 ----------GELVERLHLVNSRAIDLTEAMLLLSRANQR 212

CP001736_0532: domain 1 of 1, from 172 to 238: score 40.7, E = 5.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPL+ r+++el+ + d+++s++
CP001736_0 172 GQRRFVANASHELRTPLALNRALVELAIT--------DPAASPDA-- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +l +r +rLi+ lL l+ e++
CP001736_0 209 ----------RRLGTALLTVNQRHERLIEGLLMLADSENE 238

CP001736_0904: domain 1 of 1, from 240 to 296: score 36.9, E = 7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef+a++sH+LRTPLt+ r ++e L +
CP001736_0 240 REREFVADASHQLRTPLTSARIHIEGLSR------------------ 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++++rl r++++l sr+
CP001736_0 269 ---------LSPTARFALSDIDRLGRIVQRL---SRLAGS 296

CP001736_6108: domain 1 of 1, from 202 to 268: score 34.1, E = 4.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHELRTPLt r+++e++ + ++s++
CP001736_6 202 GQRRFVANASHELRTPLTLGRALVEIAMH--------RKTASPDV-- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e++l+ r ++Li+ lL l+ e
CP001736_6 239 ----------QQLGESLLEINARHEQLISGLLVLADSEKV 268


Histogram of all scores:
score obs exp (one = represents 24 sequences)
----- --- ---
-15 2 0|=
-14 16 0|=
-13 60 5|*==
-12 258 158|======*====
-11 627 823|=========================== *
-10 1229 1526|==================================================== *
-9 1412 1576|==========================================================*
-8 1269 1180|=================================================*===
-7 819 744|==============================*====
-6 564 428|=================*======
-5 282 234|=========*==
-4 165 125|=====*=
-3 101 66|==*==
-2 52 34|=*=
-1 29 18|*=
0 21 9|*
1 5 4|*
2 3 2|*
3 3 1|*
4 2 0|=
5 1 0|=
6 2 0|=
7 0 0|
> 8 21 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 886.2656
P(chi-square) = 0

Total sequences searched: 6943

Whole sequence top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 19
Satisfying E cutoff: 19
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: