Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Kribbella flavida DSM 17836  

Data for CP001736  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP001736.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP001736_5090 CDS_5610158-5608683 109.2 1.2e-30 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP001736_5090 1/1 292 372 .. 1 94 [] 109.2 1.2e-30

Alignments of top-scoring domains:
CP001736_5090: domain 1 of 1, from 292 to 372: score 109.2, E = 1.2e-30
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLr+Qar+++ +e ++aL E+++RV S
CP001736_5 292 EIHHRVKNNLQTVAALLRMQARRITVPEG-----QAALAEAVRRVGS 333

mAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<-*
+A++HE L++s d + vdf+++ +++++ + +v + +
CP001736_5 334 IAIVHETLSESFD-EHVDFDDVADRVAAMVADVSTVATQ-------I 372


Histogram of all scores:
score obs exp (one = represents 37 sequences)
----- --- ---
-15 7 0|=
-14 29 0|=
-13 115 43|=*==
-12 449 456|============*
-11 2167 1269|==================================*========================
-10 1556 1643|=========================================== *
-9 1012 1387|============================ *
-8 796 931|====================== *
-7 356 552|========== *
-6 257 308|======= *
-5 85 165|=== *
-4 44 87|==*
-3 33 46|=*
-2 18 24|*
-1 8 12|*
0 6 6|*
1 2 3|*
2 1 1|*
> 3 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 1024.6399
P(chi-square) = 0

Total sequences searched: 6943

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: